Verticillium dahliae: VDAG_04354
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Entry
VDAG_04354 CDS
T03450
Name
(RefSeq) pre-mRNA-processing ATP-dependent RNA helicase PRP5
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_04354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_04354
Enzymes [BR:
vda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VDAG_04354
Spliceosome [BR:
vda03041
]
Complex A
U2 snRNP components
U2 related factors
VDAG_04354
Complex B
VDAG_04354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
20705817
NCBI-ProteinID:
XP_009649096
UniProt:
G2X230
LinkDB
All DBs
Position
1
AA seq
1182 aa
AA seq
DB search
MARTRDSRSPSPAGSHHSSRRRKDDDRRESHRRDDGRDYRRRDRTRSPADVRTHRGRRDE
DFSDRTHEQRRYRDRDSDRRPRDDRDAYRRRDRSVDRDDGRRRQRRSRERYPDRERDRSA
DRRRYRDGDRDRDRDYRPRRDDSRGPQPRARPRGAAGPSSAGAAGHESAKPKPATAAPAQ
SEADKKAERLARLEAWKKSRETKKETEVNPSQTRNLLAEMDQKSIATPTVASPAVASPSV
ASPTSQTMSGPASPAPYAGKFDPKAIAKKSAASSHKHGTANGVLGAFDAQVSKTAAPVKQ
DSKAFALPANRGNISTFGFSKSSNEKPQAKRKLVLDEEDDTKRKLTKLPALPLEADDTPY
ADQDEGDDGDSDGDIFAENEEEAAAAARAAHERREREMKVDTDEAPETNGTTEEKADGDE
MEVDATGAEPSAPVVEEVQPEPVREEPQEVMKVDEEEEEDDDADPLDAFMADLQETGSRP
APKTRTKPAPEPEAYYSDDDFAYRDEDPNAKNPLAVKRRKKEIPIVDYSKIEFEPVRKNF
WTEPAELSTLTEAETNDLRLELDGIKVSGNDVPKPVQKWAQCGLTRQTLDILADLGYERP
TSIQMQALPCLMSGRDVIGVAKTGSGKTMAFLLPMFRHIKDQKPIRGDDGPIGLIMTPTR
ELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLGANQG
RVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKKVL
KSPVEVTVGGRSVVAPEITQKVEVLDEGDKFFHLLGLLGELYEEDEDARSLIFVERQEKA
DDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGIVPILIATSVAARGLDVKQLKLVV
NYDAPNHLEDYVHRAGRTGRAGNKGTAVTYITSEQENCAPGIAKALEQSGQPVPERLNEM
RKAHRDKVKAGKAKDTSGFGGKGLDRLDAERKSRRSRRRKRRKPAVSMIQAATSAIMARS
TAKPDGDAKDKESAAQATGPGGKPLDKVSAAISAINQRLGKAGQLRSGQPIDNKGPDAGA
YHATLEINDFPQKARWAVTNRTNVAKILEATGVSITTKGTFYPAGKEVPAGADPKLYILV
EGDTEVVVGAAMTELTRLLSEGAVAADTADRRAPASGRYNVV
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggctcggaccagggactcgcgctcaccatcgcctgcaggaagccaccacagctcgaga
cgtcgcaaagatgatgatcgacgcgaaagccaccgccgcgatgacgggcgcgactaccgc
cgtcgcgaccgcacccggagccctgccgacgtgagaacccaccgcggccgtcgcgatgag
gacttttctgacaggacccacgagcagcgccgataccgcgaccgcgacagtgaccgccgc
ccacgcgatgaccgcgatgcctaccgccgcagagaccgctccgtagatcgagacgacggc
cgacgtcgacagcggcggtcgcgcgagaggtaccccgaccgcgagcgcgatcgctccgcc
gacagacgaagatacagagatggcgacagggacagggacagggactaccgcccacgccgt
gacgactcgcggggaccgcaaccgcgggcccgcccacgaggtgccgccggcccttcctct
gccggtgcagccggccatgagagtgcgaagcccaagcctgccactgctgcgcccgcgcag
tcggaagccgacaagaaggccgagcgcctggcgcgcctcgaggcgtggaagaagagcaga
gagaccaagaaggagactgaggttaatccgagtcagactaggaacctcctcgccgagatg
gaccaaaagtcgatcgccactccaaccgttgcgtccccagccgtggcgtcgccctcggtg
gcctcgccgacgtcgcaaaccatgtccgggcctgcgtcgcctgccccctatgccggcaag
tttgatccaaaagccatcgccaagaaatcagcggcgtcgtctcacaaacacggtactgct
aacggcgtcctgggcgctttcgacgcccaagtcagcaagacggcagctccggtgaagcag
gactccaaagcattcgcactcccggcaaaccgcggtaatattagcacgttcgggtttagc
aaatccagcaatgagaaaccccaggccaagcgaaagctcgtcctcgacgaggaagacgac
acaaagagaaagctgaccaaactgcctgctctcccgctcgaagccgacgataccccctac
gctgaccaagacgagggtgacgatggcgattcagacggcgacatcttcgccgagaacgag
gaagaggccgcagcagcggccagagcggcgcacgagaggcgtgagcgagagatgaaggtc
gatacagacgaggcaccagaaacgaacggcaccacggaggaaaaagctgacggcgatgag
atggaagtcgacgctaccggcgctgagccctccgcgccagtcgttgaggaggtgcagcct
gagcctgtgcgtgaggagcctcaagaagtcatgaaggttgacgaagaagaagaagaagac
gatgacgccgatccgctcgacgctttcatggcagacctacaagagacaggatcgaggccg
gcgcccaagacaaggaccaagcccgctcctgaaccagaagcttactacagcgatgacgac
tttgcgtacagggacgaagatcccaacgcaaagaaccctttggccgtcaagcgcaggaag
aaggagatccctatcgtcgactacagcaagattgagtttgagccggttcgcaagaacttc
tggacggaaccagcagaactgagtaccctcacagaagcggagactaacgatctgcgcctc
gaactagacggtatcaaggtgtctggaaacgacgttcccaagcctgtccagaaatgggcg
caatgcgggttgacacggcagactctggacatcctggccgatctgggctatgaacgacca
acgtccatccagatgcaggcactgccatgtctcatgtcgggtcgggacgtcattggcgtc
gcgaagacgggttccggcaagaccatggctttcctcctccccatgttccggcacatcaag
gatcagaagcccatcaggggcgacgatggtcccatcgggctcatcatgacgccgacgcgc
gagttggcagtgcaaatccaccgcgactgcaaaccgttcctcaagcccatgggcatgcgt
gccgtttgcgcctacggcggcgcgcccatcaaggaccagattgctgacctcaagcgcggt
gcggaaatcgttgtctgcacgccgggacgcatgatcgacctgcttggagcgaaccagggg
cgggtgaccaatttgcgccgtgtgtcctatgtcgtcctggacgaggcggatcgaatgttt
gacatgggtttcgaacctcaggtcatgaagatttttgccaatatgcgccctgatcgccag
accatcttgttctccgccacaatgcccaggatcattgattccctgaccaaaaaggtcctc
aagtcgccggtggaggtcacggtcggcggccgcagtgtcgttgcccctgagattacgcaa
aaggtcgaagtgctcgatgagggcgacaagttcttccatctgcttggtcttctcggcgaa
ctttacgaggaagacgaggatgctaggagtctcatctttgttgaacgccaagaaaaggca
gatgacctgctcaaggagctcatgaccaagggctacccgtgcatgtctatccacggcggc
aaggaccaagtggaccgagactcgaccatctccgacttcaagaagggcattgtccccatt
ctcattgcgacgtcggtcgccgcaagaggtctggacgtgaagcagctgaagctggtcgtc
aactacgatgcccccaatcatctcgaggactatgtccaccgcgctggacgtaccggtcgc
gcggggaacaagggaacggcagtcacctacatcaccagcgagcaggagaactgcgcaccc
ggcatcgccaaggccctcgagcagagcggccagccggtaccagaacggctcaacgagatg
cgcaaggcccaccgcgacaaggttaaggctggcaaggccaaagacacttcgggctttggc
ggcaagggcctcgaccgacttgacgcggagcgaaaaagccggcggtcaaggagaaggaag
aggagaaagccggccgtttcgatgattcaggcggcgacgtctgccatcatggcgcgaagc
acggcgaagcccgacggcgacgccaaggacaaggagtcggcggcacaggccacgggcccc
ggcggcaagcccctcgacaaggtcagcgcggccatcagcgccatcaaccagcgcctcggc
aaggcgggccagctgcgctccggccagcccatcgacaacaagggccccgacgccggcgcg
taccacgccacgctcgagatcaacgatttcccgcaaaaggcgaggtgggccgtcacgaac
aggaccaacgtggccaagattctcgaggcaacgggcgtgtccatcacgaccaagggcacc
ttttacccggctggtaaggaggtgccggcgggcgccgacccgaagctgtacattctcgtc
gagggcgacacggaggtcgtggtcggcgcggccatgaccgagctcaccagactgctcagc
gagggcgcggtggcggcggatactgcggaccgccgtgcaccagcgtccgggcgctacaat
gttgtgtaa
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integrated database retrieval system
