KEGG   Verticillium dahliae: VDAG_06000
Entry
VDAG_06000        CDS       T03450                                 
Name
(RefSeq) histone deacetylase RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
vda  Verticillium dahliae
Pathway
vda03082  ATP-dependent chromatin remodeling
vda03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    VDAG_06000
   03083 Polycomb repressive complex
    VDAG_06000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vda03036]
    VDAG_06000
Enzymes [BR:vda01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     VDAG_06000
Chromosome and associated proteins [BR:vda03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     VDAG_06000
   HDAC complexes
    Sin3A-HDAC complex
     VDAG_06000
    BRAF-HDAC complex
     VDAG_06000
    REST complex
     VDAG_06000
    SHIP complex
     VDAG_06000
    MiDAC complex
     VDAG_06000
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     VDAG_06000
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    VDAG_06000
  Chromatin remodeling factors
   NuRD complex
    VDAG_06000
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 20707463
NCBI-ProteinID: XP_009657309
UniProt: G2X859
LinkDB
Position
8
AA seq 635 aa
MSPLGSVALNGSTASSTKKVAYFYDSDIGNYAYPTGHPMKPHRIRLAHSLIMHYNLFKKM
EIYRAKPATRGEMTQFHTDEYIDFLQKVTPDNMDQYQKEQSKFNVGDDCPVFDGLFEFCG
ISAGGSMEGAARLNRQKCDVAINWAGGLHHAKKSEGSGFCYVNDIVLGIIELLRFMKRVL
YIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGELRDIGIGPGKYYSVNFPLRDG
INDQSYKSIFEPVIEHVMKFYQPEAVVLQCGGDSLSGDRLGCFNLSMEGHANCVSYVKSF
GLPTLVLGGGGYTMRNVARTWAFETGVLVGQHMERQLPYNEYYEYYAPDFDLDVRPSNME
NSNSAEYLEKVKAALIDNLRHTAPAPSVQMQDVPRQPFGGMTEEEEAELNDLDEDENADT
RMTQDRWDKRVQNDAEFEESEDEDMDAANGMTRPRGAKKRAFNDFSKGEEEANSTAPTPV
NGTSAEETADAEPIEDADVTIEKPAEEDEPVEKEAAAEKEATPKEDQPAVDGDGDVGMDD
TADAAETTTIKKEDVEPEAAAETEQTSKPASRKATPEKAPAPATEEPTKEAESKTEPETT
APESEKTDEAPKEDEAADKMDVDEEPAKESKAGES
NT seq 1908 nt   +upstreamnt  +downstreamnt
atgtctcccttaggctctgtggccctcaatgggtcgacggcctcgtcgaccaagaaggtc
gcctacttttacgattccgacattggaaattacgcctacccgaccggccatcccatgaag
ccccatcgtattaggcttgctcacagcttgatcatgcattacaacttgttcaagaagatg
gagatctaccgcgcgaagccggcaacccgcggcgagatgacgcagttccacacggacgag
tacatcgactttctccaaaaggtcacgcccgacaatatggatcagtaccaaaaggagcag
agcaagttcaacgtcggcgacgattgtcccgtgttcgacggtctcttcgaattctgcggc
atcagcgctggcggcagcatggagggcgctgcgcgcctcaaccgccaaaagtgcgacgtc
gccatcaactgggccggtggcctgcaccacgccaagaaaagcgagggtagcggcttctgc
tacgtcaatgacattgtgctaggcatcatcgagctcctgcgtttcatgaagcgcgtccta
tacatcgacattgacgttcaccacggtgacggtgtcgaggaggccttttacaccactgac
cgcgtcatgacggtctccttccacaagtacggcgagtacttccccggcaccggcgagctc
cgcgacatcggtatcggcccgggcaaatactactcggtcaacttccccctgcgagacggc
atcaacgatcagtcgtacaagtcgatcttcgagcctgtcatcgagcacgtcatgaagttc
taccagcccgaggctgttgttctgcagtgcggtggcgacagtctctccggcgatcgtctc
ggttgcttcaacctcagcatggagggccatgccaactgcgtctcgtacgtcaagagcttc
ggccttcctaccctggtactcggcggcggtggctacaccatgcgcaacgttgcccgcacg
tgggcctttgagactggtgtcctggttggtcagcacatggagcgccagctcccgtacaat
gaatattacgaatactacgcccccgatttcgatctcgatgtccggccttccaacatggag
aattccaatagcgcagagtatctcgagaaggttaaggccgccctcatcgataacctccga
cacacagcccccgctccctctgtccagatgcaagatgtgccccgtcaaccctttggcggc
atgacggaagaagaggaggctgaactcaacgacctggacgaggatgagaacgctgatacc
cgtatgacgcaagatcgttgggacaagcgcgtgcagaacgacgccgaatttgaagagagc
gaagacgaagacatggacgctgccaacggcatgacgcgacctcgtggagcaaagaagcgc
gccttcaacgacttttcaaagggcgaggaggaggccaacagcaccgccccaacccctgtc
aacggaacgagtgctgaggaaactgctgatgctgaacccatcgaggatgccgatgtgacc
attgaaaagcccgccgaggaggacgaacctgtggagaaggaggcagctgccgagaaggag
gcgacgccaaaagaggaccagccagcagtggatggagacggtgatgtcggcatggacgat
acggccgatgctgcggagacgaccacgatcaagaaggaggatgtcgagcccgaggcggcc
gccgagacagaacagaccagcaagccggcgtcacgcaaggccacgcccgagaaagctcct
gctcctgctaccgaggaacccaccaaggaggccgaatccaagactgagcccgagacgact
gcacccgagtctgagaagacagacgaagcgcccaaggaggacgaggcggccgacaagatg
gacgtggacgaggagcctgccaaggaatccaaggccggcgagtcgtag

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