Verticillium dahliae: VDAG_06000
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Entry
VDAG_06000 CDS
T03450
Name
(RefSeq) histone deacetylase RPD3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
vda
Verticillium dahliae
Pathway
vda03082
ATP-dependent chromatin remodeling
vda03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
VDAG_06000
03083 Polycomb repressive complex
VDAG_06000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vda03036
]
VDAG_06000
Enzymes [BR:
vda01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
VDAG_06000
Chromosome and associated proteins [BR:
vda03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
VDAG_06000
HDAC complexes
Sin3A-HDAC complex
VDAG_06000
BRAF-HDAC complex
VDAG_06000
REST complex
VDAG_06000
SHIP complex
VDAG_06000
MiDAC complex
VDAG_06000
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
VDAG_06000
Heterochromatin formation proteins
Other heterochromatin formation proteins
VDAG_06000
Chromatin remodeling factors
NuRD complex
VDAG_06000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
20707463
NCBI-ProteinID:
XP_009657309
UniProt:
G2X859
LinkDB
All DBs
Position
8
AA seq
635 aa
AA seq
DB search
MSPLGSVALNGSTASSTKKVAYFYDSDIGNYAYPTGHPMKPHRIRLAHSLIMHYNLFKKM
EIYRAKPATRGEMTQFHTDEYIDFLQKVTPDNMDQYQKEQSKFNVGDDCPVFDGLFEFCG
ISAGGSMEGAARLNRQKCDVAINWAGGLHHAKKSEGSGFCYVNDIVLGIIELLRFMKRVL
YIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGELRDIGIGPGKYYSVNFPLRDG
INDQSYKSIFEPVIEHVMKFYQPEAVVLQCGGDSLSGDRLGCFNLSMEGHANCVSYVKSF
GLPTLVLGGGGYTMRNVARTWAFETGVLVGQHMERQLPYNEYYEYYAPDFDLDVRPSNME
NSNSAEYLEKVKAALIDNLRHTAPAPSVQMQDVPRQPFGGMTEEEEAELNDLDEDENADT
RMTQDRWDKRVQNDAEFEESEDEDMDAANGMTRPRGAKKRAFNDFSKGEEEANSTAPTPV
NGTSAEETADAEPIEDADVTIEKPAEEDEPVEKEAAAEKEATPKEDQPAVDGDGDVGMDD
TADAAETTTIKKEDVEPEAAAETEQTSKPASRKATPEKAPAPATEEPTKEAESKTEPETT
APESEKTDEAPKEDEAADKMDVDEEPAKESKAGES
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccttaggctctgtggccctcaatgggtcgacggcctcgtcgaccaagaaggtc
gcctacttttacgattccgacattggaaattacgcctacccgaccggccatcccatgaag
ccccatcgtattaggcttgctcacagcttgatcatgcattacaacttgttcaagaagatg
gagatctaccgcgcgaagccggcaacccgcggcgagatgacgcagttccacacggacgag
tacatcgactttctccaaaaggtcacgcccgacaatatggatcagtaccaaaaggagcag
agcaagttcaacgtcggcgacgattgtcccgtgttcgacggtctcttcgaattctgcggc
atcagcgctggcggcagcatggagggcgctgcgcgcctcaaccgccaaaagtgcgacgtc
gccatcaactgggccggtggcctgcaccacgccaagaaaagcgagggtagcggcttctgc
tacgtcaatgacattgtgctaggcatcatcgagctcctgcgtttcatgaagcgcgtccta
tacatcgacattgacgttcaccacggtgacggtgtcgaggaggccttttacaccactgac
cgcgtcatgacggtctccttccacaagtacggcgagtacttccccggcaccggcgagctc
cgcgacatcggtatcggcccgggcaaatactactcggtcaacttccccctgcgagacggc
atcaacgatcagtcgtacaagtcgatcttcgagcctgtcatcgagcacgtcatgaagttc
taccagcccgaggctgttgttctgcagtgcggtggcgacagtctctccggcgatcgtctc
ggttgcttcaacctcagcatggagggccatgccaactgcgtctcgtacgtcaagagcttc
ggccttcctaccctggtactcggcggcggtggctacaccatgcgcaacgttgcccgcacg
tgggcctttgagactggtgtcctggttggtcagcacatggagcgccagctcccgtacaat
gaatattacgaatactacgcccccgatttcgatctcgatgtccggccttccaacatggag
aattccaatagcgcagagtatctcgagaaggttaaggccgccctcatcgataacctccga
cacacagcccccgctccctctgtccagatgcaagatgtgccccgtcaaccctttggcggc
atgacggaagaagaggaggctgaactcaacgacctggacgaggatgagaacgctgatacc
cgtatgacgcaagatcgttgggacaagcgcgtgcagaacgacgccgaatttgaagagagc
gaagacgaagacatggacgctgccaacggcatgacgcgacctcgtggagcaaagaagcgc
gccttcaacgacttttcaaagggcgaggaggaggccaacagcaccgccccaacccctgtc
aacggaacgagtgctgaggaaactgctgatgctgaacccatcgaggatgccgatgtgacc
attgaaaagcccgccgaggaggacgaacctgtggagaaggaggcagctgccgagaaggag
gcgacgccaaaagaggaccagccagcagtggatggagacggtgatgtcggcatggacgat
acggccgatgctgcggagacgaccacgatcaagaaggaggatgtcgagcccgaggcggcc
gccgagacagaacagaccagcaagccggcgtcacgcaaggccacgcccgagaaagctcct
gctcctgctaccgaggaacccaccaaggaggccgaatccaagactgagcccgagacgact
gcacccgagtctgagaagacagacgaagcgcccaaggaggacgaggcggccgacaagatg
gacgtggacgaggagcctgccaaggaatccaaggccggcgagtcgtag
DBGET
integrated database retrieval system