Vibrio diabolicus: AL552_13270
Help
Entry
AL552_13270 CDS
T05332
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL552_13270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_13270
Enzymes [BR:
vdb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL552_13270
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL552_13270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVF94687
LinkDB
All DBs
Position
1:complement(887154..890615)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQTVSLFPDWETLPYDNFSPHQEIISERIARLYQLPSQRNGITIVPVSTVLQRQS
PRDFLLQHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSDD
PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFEAR
REPESIYMQVTKGTWPPGIEYWQPLFFDHTETLFEYLPEDSQVITYGDIESAVDTFLTDV
EYRYDQKKVDPLRPLLTPEQLWLKKDELFSQLKQLPMAQLSLEKVVKRAGRQNLPVQSLA
ELGVQQQNKEPLSRLRQFSEQFSGKIVFSVESEGRREALTELLQGIKVRPVVHGSLYQAL
DSGDRFSLILGAAEHGFIHEELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGFKFELDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVQALKEGKEPSLDELLREQTEVEMRIPALLPDDYI
PDVNTRLSMYKRIASVTSGEELSELKVELIDRFGLLPDATKNLLAVSELKISAGSLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLADRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgattctttccgtcaccaatccttctgagcgtggcgacaaaaaacag
ctaggtaatttaccgggcgcggctctacctctagctattgctgagctagccaagcagcat
tcgagtcactcgctactcgtcgtgcctgacccgcaaatcgctttaaagcttcaagcggag
attgaacaattcaccgaccaaacagtaagcctgttccctgattgggaaacgctgccttac
gataacttttctccgcatcaagaaatcatctctgaacgtatcgcgcgcctataccaactg
ccaagccaacgtaatggcataaccatcgtcccggtcagtacagtattgcaacgccaatcg
ccacgtgattttctgttgcaacacactttaatggtgaaaactggtgatcgactctcgctt
gagaaactacgtgtacaacttgaaaattcgggctaccgccacgtagaccaagtatttggg
ccaggtgaatacgcgagccgtgggtcgattctggatctctttcctatgggcagcgatgac
ccgtatcgcatcgacttctttgatgatgagatagataccattcgcacgtttgatccagag
aaccaacgctctatcgacgatattcagcaaatccaattgctgcctgcgcatgagttccca
accactaaagaagcgattgaggattttcgtacacgttggcgcacccaatttgaagcacgc
cgagagccagagtcgatctacatgcaagtgaccaaaggcacttggcccccgggtattgag
tattggcaaccgctgttttttgaccataccgagactttatttgaatatttgccagaagac
tctcaagtcatcacatatggtgatattgaatctgcggtcgatactttcttaaccgatgtc
gaatatcggtacgaccagaaaaaagttgatccactacgtcctcttttgactcctgaacaa
ctttggctgaaaaaagacgaactcttcagccaactaaaacagctccctatggctcaattg
agcctagagaaagtggttaagcgtgctggtcgtcaaaacctaccagtacaatcgttagcc
gagcttggcgttcagcaacaaaataaagaaccgctttcgcgtcttcgtcaattcagtgag
caattcagcggcaaaattgttttctcggtagagtcagaaggtcgtcgtgaagcactaacg
gaactgttgcaaggcatcaaagttcgcccagtcgtacatggctcactttaccaagctcta
gattcgggtgatcgcttcagtttgatcttaggcgctgcagagcatggtttcattcacgaa
gagctgaacttcgctctgatctgtgaaagtgatctacttggtgaccgcgttatccagcga
cgccgcaaagataaaaaagcagtcaacagtgacaccgttattcgccaccttgcggaattg
aaacccggtcaacccgtggttcatattgatcacggtattggccgctacatcggtttacaa
acacttgaagccggtggcatgaaaacggaatacgtcacccttgagtatcaaaacgatgcc
aagctctacgtaccggtttcatcactaaaccttattagccgttattcaggcggtgctgaa
gaaagtgcaccactgcataaattgggtggcgaggcttgggcaaaagcacgtcgtaaagcg
gcagaaaaagtgcgtgatgtcgcggccgagttgctggatgtttacgctaaacgagaatta
aaaccgggcttcaaatttgagctagatcgtgggcaatacgcaacgtttaaagcaacattc
ccatttgaagaaacggatgaccaagcgatggccatcaatgccgttttgtcagacatgtgc
caagcaaaagcgatggatcgcctagtgtgtggtgacgtgggctttggtaaaacggaagtt
gctatgcgcgcagcatttgtcgcaacggataacagtaaacaggtcgccgtactcgtaccg
acaaccctgcttgctcagcagcatttcgaaaacttccgtgaccgttttgccaacttacca
atccgagttgaagtactgtctcgttttaaatcggccaaagaacaaaaagtcattttgcaa
gacgttgcagatggtaaagtcgatattgtcgtcggtacgcataagctgctttcaagcgat
attaaattcaaagatttaggtttgttgatcgttgacgaggaacaccgcttcggggttcgt
caaaaagaaaaagtcaaagcaatgcgtgcggatgtggatattcttaccctcaccgcaaca
ccaattccacgtaccctgaatatggccatgagtggcatgcgcgatctgtcgatcatcgcg
acacctccagcgcgtcgtttagccatcaaaacctttgttcgtcaaagagaagaatctgtg
gtccgtgaggcggtactgcgtgaaatcatgcgtggtggtcaggtttacttcctgcacaat
caggtagagactatcgagaaaaccgcggaagacttgcaaaagcttattcctgaagcacga
attaccgtggcacatggtcaaatgcgtgagcgcgaactagagcgcatcatgaatgatttc
taccatcagcgctttaatgtgttggtgtgtacaacgatcatcgagaccggtatcgacgta
ccaacggcgaataccattattatggatcgtgcagacaaccttggtttagcgcaactgcac
caattgcgtggccgtgttggacgctctcatcatcaagcctatgcttacttattaacgcca
catccaaaagccatgaccaaagatgctatcaagcgtcttgatgcgattgcttcactggaa
gacttaggcgcaggctttactctagcaactcacgacttggaaatccgtggggctggtgaa
ctgcttggtgacgagcaaagtgggcaaattcaatcggttggttttacactgtacatggaa
atgctggaacaagcagtccaagcattgaaagaaggtaaagaaccttctttggacgagctg
cttcgtgaacaaactgaagttgaaatgcgaatcccagcgctcttgccagacgattacatc
ccggatgtgaatacacgactgtcgatgtacaaacgtattgcgagcgttacgagtggtgaa
gaactctcagagctcaaagtggaacttatcgatcgatttggactgcttccagacgcgacg
aagaacttacttgctgtctcagaattgaaaatttcggctggtagcctaaaagcgaaaaag
atagaagcccatgataaaggcggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttggttaaactgctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggcggaccgacgtaaacgcattcagtttgttcaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
DBGET
integrated database retrieval system
