Varroa destructor (honeybee mite): 111253841
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Entry
111253841 CDS
T07383
Name
(RefSeq) general transcription factor IIH subunit 4-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
vde
Varroa destructor (honeybee mite)
Pathway
vde03022
Basal transcription factors
vde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vde00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111253841
09124 Replication and repair
03420 Nucleotide excision repair
111253841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vde03021
]
111253841
03400 DNA repair and recombination proteins [BR:
vde03400
]
111253841
Transcription machinery [BR:
vde03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111253841
DNA repair and recombination proteins [BR:
vde03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111253841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
111253841
NCBI-ProteinID:
XP_022669672
LinkDB
All DBs
Position
Unknown
AA seq
476 aa
AA seq
DB search
MSSNIQYRDLISYLQTLESAILNQLYRHPATCLAVFRKLPPLARHYVIRLLYIRQAVPQA
VVSSWYVQDAVKENIAAQDALKSLHLLNEVNLPGGLPGWMLNINFQEKLKEALAGGGDPW
LVYGELDKDKHGRDAKFLDQYAKERWDCVLHYMVGSEFCTIGDASQVPAESGISHDAIRI
LLHSGLMRQDETNANKSLITMEGFQFLLMDTEDQVWYFILQYLSTVEGRGISLVECLQFI
FQLSFLTLGKDYSIKGMSQPLLVFLQHLREFGLVYQRKRRSGRFYPTRLAIGLASGLKEL
DANKELTGSKDEEQDQGYIIVETNYRVYAYTDSPLQVALISLFCDLSYRFPNLVVATLSR
ESVRQALKGGITSAQITHFLKTRSHRVVADREEGIIPMTVSDQLHLWEKERDRFKMTESV
LYSQFQTHADFEMLRNYANDMHVLLFENPQRRLMVVSKSGDNDVRHYWKRHKKEYD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaatatccagtatcgtgatttgatctcatatcttcaaacattggagtcggcc
atcctcaaccaattatacagacatcccgctacatgtctcgcggtcttccggaaattgcct
ccattagctcgccattacgtgattcgtctattgtacattcggcaggctgtgccacaggcc
gtagttagctcatggtatgtgcaggatgcagttaaggaaaatattgccgctcaagatgcc
cttaaaagcctgcaccttttaaacgaagttaatttgccaggtggcttgcccggttggatg
ttgaacatcaacttccaagaaaagctgaaagaagctttagctggcggtggggatccctgg
ttagtgtacggagagttggacaaagataaacatggacgcgatgcgaagttcttagatcag
tatgccaaagaacggtgggattgcgtacttcactacatggttggatccgagttttgcaca
attggagatgcctcacaggtaccagcggagagcggaatctctcacgacgcaatccggatt
cttcttcactcaggacttatgcggcaggatgaaacaaatgcaaacaagagcctaatcaca
atggaaggctttcagtttttattgatggatactgaagatcaggtgtggtactttatcctg
caatatctgtcgaccgtcgagggacgtggcatctcccttgtggagtgtctgcagtttatt
tttcaactgagtttcctcacacttggtaaagattatagtattaaaggaatgagccaaccc
ctactcgtgtttttgcaacatctgcgcgagttcggcctggtttatcagcgtaaacgtcgt
tcaggacggttctacccaacacgactagcaattggtttggcgtcaggcttaaaggaactg
gacgcaaacaaggaactcaccggatcgaaggatgaagaacaggaccagggctatatcatc
gtcgaaaccaactatcgagtgtacgcgtataccgattcaccactgcaggttgcgttaatt
tcactgttttgcgacctctcgtaccgcttccctaacctagtagttgccacgttaagccgg
gaaagcgttcgacaggcgctcaaaggcggaattacgtccgcccagatcacgcacttcctc
aagacgcgaagtcatcgcgttgtcgctgaccgtgaagaaggcatcataccgatgacggtg
tcagatcagctacatttatgggagaaagagcgagatcgtttcaagatgacagaaagcgtt
ctctattcacagttccagacacacgccgattttgagatgcttcgtaactatgcaaacgat
atgcatgtattactgtttgagaacccgcaacgaaggctaatggtcgtaagcaaatcgggc
gataacgacgttcgacattactggaagcgtcataaaaaggaatacgattga
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