Veillonella dispar: NCTC11831_00461
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Entry
NCTC11831_00461 CDS
T05848
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vdn
Veillonella dispar
Pathway
vdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11831_00461 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdn03400
]
NCTC11831_00461 (mfd)
Enzymes [BR:
vdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11831_00461 (mfd)
DNA repair and recombination proteins [BR:
vdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11831_00461 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
TRCF
DEAD
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
SecA_DEAD
DAP3
Motif
Other DBs
NCBI-ProteinID:
VEG93039
LinkDB
All DBs
Position
1:507640..510936
Genome browser
AA seq
1098 aa
AA seq
DB search
MDNTLTQLLSQNPSFVDGLNAFQRKGKSVIYGLSGSQKSFLLNQAFSTGLTKPVVIVVHD
KDHKEMWERDLAFFWTNIPVLSFPITDHVDFTTIARSLEDQGAQMRALALLAWQEPAVVI
ANAEEVTQYVVSPQYLKGQSLHFSLNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRGD
ILDIYPVNSEHPIRIEFFGDEIDTLRFFSVENQRSIEQIDSYTVTPFFLGKSDADCTLLS
YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWSELQRTVEATNQVAFTFMQQRSIG
LAGFTPIGIQGKTMTSFERQIPLLTDEIKQWHRLKHQVVLVLNNQQRREGIERALEGEGI
AFVHSAEWIAKPNTVVILQGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIDYAGSDKLFLPANNLDQLQKY
IGNEGDVPRINKMGGRDWAKVVTKAKKSIDDLADKLVDLYAQREITQGFAFLPDQPWQQE
FEDAFPYEETEDQLQATAEIKASMEKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQV
AVLVPTTVLAQQHFQTFLNRFAPFGVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIGTHS
LLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVRE
MSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMGELLEEA
LPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAFIDDA
YIKDSARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGI
KSIVRRDQQLTIHWHDDSKMADWDMGAVREDLWKKMKFADSKPAILYVSLKGMKGSILTI
TEAVMKALSQKSSSKEGL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggataatacattaacacaactgctttcacagaacccatcctttgtggatgggctaaac
gcatttcagcggaaagggaagtcagtcatatatggtcttagtggatctcaaaagagtttc
ctcttaaaccaagctttttctacgggtcttacaaagcctgtggttatcgtagtccatgat
aaggaccataaagagatgtgggaacgagatttagcctttttctggactaatattcctgtt
ctatcatttcctataacagatcatgtggactttacaacgattgctcgtagccttgaggac
caaggggctcaaatgcgtgctttagcattgcttgcatggcaggaacctgccgtagtcatt
gcgaatgctgaagaggttacacaatatgtggtatctccacaatatttaaaaggacagtcg
ttacatttctctttgaatgatacgattgaacgcgatacagctcttgaacagctcgttaca
attggatatgaacgtgtagaccaggtggaacaacgtggtcattttgccgtgcgcggggat
attttagacatatatcctgttaatagtgaacacccgatacgtattgagttctttggggat
gaaattgatacgttgcggttcttctctgtggagaaccaacgttccattgaacaaattgat
tcttatacagtgacacctttctttcttggtaaaagtgatgcagattgcaccttattatca
tatgtgaaagaaggcaccctcatttacgatgagcctggtcgtattcaggaagcattaaag
aaattcctcaaggaggatccaacacatcgtaaaaatcattgtgactggagtgaattgcaa
cgtactgtagaagcgacgaatcaagtagctttcacatttatgcaacaacgttctatcggc
ttagctggatttaccccgattggtattcaaggcaagacgatgacgagctttgagcgtcaa
attcctttattaaccgatgagattaaacaatggcatcgcttaaaacatcaagttgtattg
gtattaaataatcagcaacgaagagaaggaattgaacgtgctcttgaaggggaaggtatt
gcctttgttcatagtgcggaatggattgcaaagcctaatacggtagttatcttacaaggt
ttattgaccgatggctttgaattaccaaatagccatttagtagttgtcgtagaaggtaat
atttacggacaacaaaaacgcaaacttcggaacaagcctaaaaagggccaagaaatcaat
tactttacggatttaacgcctggtgactatgtagttcatagtatgcacggtattggtaag
tatattggtcttaaaacgatagaaacagaagggattcatcgggattatattgaaattgac
tatgcgggatcagataaattattcttacctgccaacaacttagatcaattacaaaagtat
attggtaatgaaggtgatgtgccgcgcatcaataaaatgggtggccgtgactgggctaag
gttgttacaaaggcaaagaaatctattgatgatttagcagataagttagttgacctctat
gcacagcgtgaaataacgcaaggctttgcattcttgcctgaccaaccatggcagcaggaa
tttgaagatgcatttccttatgaagaaacggaagatcaattacaagcaacagcagaaata
aaggcatccatggaaaaaccagttcctatggaccgtttgctagcaggtgacgtaggcttt
ggtaaaacagaggtggccatgcgtgccatctttaaggctgttatgagcggcaaacaagta
gcggtacttgttccaactactgttttggcacagcaacatttccaaaccttcttgaaccgt
tttgctccatttggtgtcaaggtagatgtactcaatcgtttccgcagtacagcagagaaa
aaacaagttctaaaaggcgttgaggatggctctattgatgttcttatcggcacacattcg
ttgcttaataaaaaggttgtcttcaaagatttaggtatgctcgtagtagatgaagaacaa
cgtttcggggtagctcaaaaggaaaaatggaaagagtgggccaataatattgatgtactc
accttgagtgccacaccaattcctcggacattacatatgtccctcgttggtgttcgtgag
atgtccgttatcaatacgccaccagaagagcgcctacctgttcaaacctatgtggtggaa
tatgatatgaacctcgtggccgatgcaatcaagcgcgaattagcgcgtggtggtcaggtt
tactttgtatataaccgtgtagcatctattaatcatatgggtgagttattagaagaggcc
ttgcctggtttacgttacgctattgctcatggtcaaatgacaggtcgtcaaattgaggaa
atcatgactgatttctatgaaggccattacgatgtattattgtctactagtatcatcgaa
acaggtctagatataccaaatgcgaataccatcatcatttatgatgcggaccgcttaggt
ttatctcagctatatcaaatgcgtggccgtgtagggcgttctcgtagacgggcttatgca
tactttatgtatcgtcctgataaaatgctctctgaagcggcagaaaagcgcttaaaagct
attgaagagttcacagagctcggtgctggctttaaattggcgatgcgcgacttagaaatt
cgcggcgctggcaatttattaggctcgcagcaacatggtaatatcgcatccgtcggcttt
ggtatgtacgtaagtatgttagaagaagccattgcgaaggctcaaaataaagaagttgaa
cgggaagtatccatcgatccagctatcgacttagaggtagatgcctttatcgacgatgcg
tatatcaaggatagcgctcgtaagatctccgtatatcaacggttgttacatattaaatcc
aaagaacagcttgatgatatgaccgatgaactcatcgatcgattcggtactccaacagat
ccagtagaccgattattgcgcattgcccaaattaaagagcaagcacgtttacttggcatt
aaaagtatcgtccgtagagatcaacagcttactatccattggcatgatgattctaagatg
gccgactgggatatgggggctgtgcgagaagatttatggaaaaagatgaaatttgcagac
tccaagccagccatattgtatgtgagccttaaaggcatgaaaggttctattttgaccatt
acggaagcggtgatgaaggctttgagccagaaatcatcgtctaaggagggcctatga
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