Verrucomicrobium sp. GAS474: SAMN05444156_2536
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Entry
SAMN05444156_2536 CDS
T09813
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMN05444156_2536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_2536
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMN05444156_2536
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMN05444156_2536
BRITE hierarchy
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_22
AAA_16
AAA_5
Motif
Other DBs
NCBI-ProteinID:
SDU19578
UniProt:
A0A1H2GJI7
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All DBs
Position
I:complement(2967013..2969100)
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AA seq
695 aa
AA seq
DB search
MPQDVFDLQSPYAACGDQPEAIRQLTARIGGGAQDTILQGVTGSGKTFTTASVIANLNRP
TLVICHNKTLAAQLYSEFRQFFPKNAVEYFVSYFDYYQPEAYIPASDTYIEKDSSLNEEI
ERMRLSATSALLTRRDVVVVASVSCIYGLGSPEDYAMMICPVDVGMKLTREQLLTKLVEI
HYERGDFELARGKFRVRGDVVEVGPATEEWALRIEFFGDEIERLTRIDPLTGETLERIDR
IILFPARHYVTPFEKLQRATVAIRQEMLARIDELEKQGKLLESQRIKMRTTYDLELMEEM
GFCNGIENYSRHLAGRPAGSRPHTLIDFFPKDFLTVIDESHATVPQIGGMFAGDKARKSV
LVDHGFRLPSALDNRPLNFPEFEAITGQRLFVSATPGDYELNRTRGDVVEQIIRPTGLLD
PEIEVRPLKSQIDDMMEEVRKRVEKDERSLVLTLTKRTAEDLTQYLSDLGIRVRYLHSEV
DTIERVEILRGLRAGEFDVLVGINLLREGLDLPEVSLVGILDADKEGYLRSEKSLIQMAG
RAARHVNGRVILYADSTTRSMQALLNITSYRRKRQIEYNTEHHITPKSVRRAVQESLRLV
SQEGGRQGGGVSARMALKEGAGQFDAADLLKELQGEMIEASSKLEYEKAALLRDQISELK
KQLGIDKIEPRSRGEKVSPVVYKIPKKSPGKKSKP
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagacgtcttcgacctccaatccccctacgccgcctgcggcgaccagcccgag
gcgatccgccagctgacggcgcggatcgggggcggggcacaggacacgatcctccagggc
gtcaccggttccgggaagactttcacgacggcgagcgtcatcgcgaacctgaaccgcccg
accctcgtcatctgccacaacaagacgctggcggcccagctctacagcgagttccggcag
ttcttcccgaagaacgccgtcgagtacttcgtctcctacttcgattactaccagcccgag
gcctacatcccggcgagcgacacctacatcgagaaggattcctccctcaacgaggagatc
gagcggatgcgcctctccgcgacgagcgccctcctgacgcggcgggacgtcgtcgtcgtc
gccagcgtctcgtgcatctacggcctcggttcccccgaggactacgcgatgatgatctgc
cccgtcgacgtgggcatgaagctgacccgggagcagctcctcacaaagctcgtcgagatc
cattacgagcggggcgacttcgagctcgcccgggggaagttccgcgtccggggcgacgtc
gtcgaggtcggccccgccaccgaggagtgggcgctgcggatcgagttcttcggcgacgag
atcgagcgcctcacccggatcgatcccctgaccggcgagacgctggagcggatcgaccgg
atcatcctctttccggcccgccattacgtcacccccttcgagaagctccagcgcgccacc
gtggcgatccggcaggagatgctcgcccgcatcgacgagctggagaagcaggggaagctc
ctcgaatcccagcggatcaagatgcggacgacctacgacctcgagctgatggaggagatg
ggtttctgcaacgggatcgagaactactcccgccacctcgccgggcgtcctgccggctcc
cggccccacacgctgatcgacttcttcccgaaggatttcctcaccgtcatcgacgaatcg
cacgccaccgtgccgcagatcggcgggatgttcgccggggacaaggcccgcaagagcgtc
ctcgtcgaccacggattccgccttccctcggcgctcgacaaccggccgctgaacttcccc
gagttcgaggcgatcaccggccagcggctcttcgtctcggcgacgccgggcgattacgag
ctgaaccggacccgcggcgacgtcgtcgagcagatcatccggcccaccggcctcctcgat
cccgagatcgaggtccgcccgctgaagagccagatcgacgacatgatggaggaggtccgc
aagcgggtcgagaaggacgagcgttccctcgtcctgacgctgacgaagcggaccgcggag
gacctcacccaatacctcagcgacctcggcatccgggtccgctacctccattccgaggtc
gacacgatcgagcgggtcgagatcctgcgcggcctccgggcgggggaattcgacgtcctc
gtcgggatcaacctgctgcgggagggcctcgaccttcccgaagtctccctcgtcggcatc
ctcgacgccgacaaggagggttacctccgctccgagaaatcgctgatccagatggcgggc
cgcgccgcccggcacgtgaacgggagggtgatcctctatgccgactcgacgacccgctcg
atgcaggccctcctgaacatcacctcctatcgccggaagcggcagatcgaatacaacacc
gagcaccacatcactccgaagagtgtccgtcgcgccgttcaggaaagcctccgcctcgtc
tcccaggaaggcgggcggcagggcggcggggtctcggcccggatggcgttgaaggagggg
gcggggcagttcgacgcggccgacctgctcaaggagttgcagggggagatgatcgaggcg
tcgtcgaagctggagtatgagaaggcggcgttgctgcgggatcagatctccgagctgaag
aagcagttggggatcgacaagatcgagccgaggagccgtggggagaaggtttccccggtg
gtgtataagattccgaagaagagccctgggaaaaagtcgaagccctag
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