Vibrio sp. EJY3: VEJY3_04510
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Entry
VEJY3_04510 CDS
T01683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VEJY3_04510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vej03400
]
VEJY3_04510
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VEJY3_04510
DNA repair and recombination proteins [BR:
vej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VEJY3_04510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEX21400
LinkDB
All DBs
Position
1:complement(1026699..1030160)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPLAIAELAKQHTSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQQNGITIVPVSTVLQRQS
PRDFLLQHTLMVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGCDD
PYRIDFFDDEIDTIRTFDPENQRSIEDIKQIQLLPAHEFPTTKEAIEEFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEAAVETFLTDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFTHFKQLPQAQLHLDKIVKRAGRQNLAVQSLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVAHQSFYKAL
DSKDRFSLILGATEHGFIHDELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKRELKPGFKFELDRGQYATFKATF
PFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVAEGKVDIVVGTHKLLSND
IRFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRIPALLPDDYI
PDVNTRLSMYKRIASVTNADELSELKVELIDRFGLLPDATKNLLAVSELKFAAGSLKAKK
IEAHDKGGFVEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLTDRRKRVQFVKD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgatactttccgtcaccaacccatctgagcgtggcgataaaaaacag
ttaggtaatttacctggcgctgctctgccgcttgcgattgcagagctcgcaaaacagcat
acaagccattcactgcttgttgtgccagatcctcaaatcgccctgaaactgcaagcagaa
atagagcagttcaccgatcagcctgtcagccttttccctgattgggaaacactgccatac
gataacttttctccacatcaggagatcatttctgatcggatcgcgcgcttataccagttg
cctacccaacaaaacggcatcacgattgtgccagtcagcaccgtactgcagcgtcaatct
ccgcgtgatttcttgttgcaacacactttgatggtaaaaaccggcgatcagttttcactc
gaaaagctgcgtgttcagttagaaaactcaggctatcgtcacgtagatcaggtttttggc
cctggtgagtatgcaagccgtggttccattcttgatctcttccctatgggttgcgatgac
ccgtaccgtatcgatttcttcgatgatgagatcgacaccatacgtacgttcgatccagag
aaccaacgctcgatagaagacatcaaacagattcagttgcttcccgctcatgagttcccg
accaccaaagaagcgattgaagagtttcgtacccgctggcgtactcagtttgaagcgcgt
cgtgagcctgaatcgatttacatgcaggtgaccaaaggaacgtggccggcagggattgaa
tactggcaacccttgttctttgaccatacagaaaccctgtttgattacttgccagaagac
tcgcaactgatcacttatggtgacattgaagccgccgtagaaactttcttaactgacgtt
gagtaccgttacgatcagaagaaaatcgatccattacgcccactgcttgcaccgcatgat
ctgtggctgaagaaggatgaactcttcacccacttcaaacagcttccgcaagcacaactg
catctggacaaaatcgtcaagcgtgctggtcgtcagaatttggcggtgcagtcgttagca
gaactgggcgttcaacagcagaacaaagaaccactttcgcgtctgcgtcagttcagtgag
cagttcactggaaaaatcatcttctctgttgaatcagaaggtcgacgtgaagcgctcaca
gagcttctacaaggcattaaagttcgccctgtcgctcaccaatcgttctacaaggcgctc
gattctaaagatcgatttagcttgattctgggtgcgactgagcatggttttatccatgat
gagctgaacttcgcccttatctgcgaaagtgacctgcttggtgaccgcgtcatacaacgt
cgtcgtaaagacaaaaaagccgtcaacagcgataccgttattcgccaccttgccgagcta
aaaccaggccagcccgttgttcatatcgaccacggtattggtcgctatatcggcctgcaa
acgcttgaagcaggcggtatgaaaactgagtacgtaacacttgaatatcaaaacgacgcc
aagttgtacgtacccgtatcatcactgaaccttatcagccgttattctggtggcgcagaa
gagagcgcgccgctgcataaactcggcggagaagcatgggttaaagctcgccgtaaagcc
gccgagaaagtgcgtgacgtagcagcagagttactggatgtttacgccaaacgtgaatta
aaaccgggctttaaattcgaattggatcgaggtcagtacgccacattcaaagcaacgttc
ccattcgaagaaaccgatgaccaggcaatggctatcaatgccgttatgtctgacatgtgc
caaccaaaagccatggatcgcttggtatgtggtgacgttggttttggtaaaaccgaagta
gcaatgcgagcagcatttgttgcaacggacaacagcaagcaagtcgcagtgctggttccc
actaccctacttgcccagcagcactttgaaaacttccgtgaccgctttgccaacttaccg
atccgagtagaagtgttatctcgctttaaatcggctaaagaacagaaagcgattttgcaa
gatgtagcggaagggaaagttgatatcgtcgtgggaacacacaaactgctttctaacgat
attcgattcaaagaccttggcctgctcattgtcgacgaagagcaccgttttggcgtgcgt
caaaaagagaaagtgaaagcaatgcgtgcggatgtcgatattctgaccctaaccgcaacg
ccgatccctagaacgctcaatatggcgatgagtggaatgcgcgatctgtccatcatcgct
actccaccagcgcgccgactagcaatcaaaacctttgtccgacagcgtgaagagccggtt
gtacgtgaagcggtactgcgtgaaatcatgcgtggtggtcaggtttacttcctgcataat
caggtcgaaaccattgaaaagaccgctgaagatctacaaaaactgattccagaagcgcgt
atcactgtggcacatggacaaatgcgtgagcgcgagctagaacgcatcatgaacgacttc
taccatcaacgttttaacgtactggtgtgtaccacgatcattgaaacaggtatcgatgtc
ccaacggcgaataccatcatcatggatcgtgcggataatcttggtttggctcaactgcat
cagctaaggggccgtgtgggtcgttctcaccaccaagcctacgcttatttactaacaccg
catccaaaagcgatgaccaaagatgccattaagcgtcttgacgccattgcctctctcgaa
gatcttggcgctggctttacgctcgcaacacacgatttagaaattcgcggagccggtgag
ctacttggtgatgaacaaagtgggcaaattcaatcggttggctttacactgtatatggag
atgctcgaacaggcggttgaagcattgaaagaagggaaagagccatcgctggatgagttg
ctgcgcgagcagaccgaagtggaaatgcgcattcctgcactcttgccggatgattacatc
cccgatgtcaatacacgcctttcaatgtataaacgtatcgcgagcgtcaccaacgccgat
gagttatcagaattgaaagtggaattgattgaccgctttggtcttttgcctgacgcaaca
aaaaatctgctggctgtctcagaactgaaatttgccgcaggtagtctgaaagcgaaaaag
attgaagcccatgataaaggtggatttgtagagttttaccctgatgctgacataaatcca
gcgtatttagttaaactcctgcaatcacagcctcaaaaatttgcgatggaaggtccaact
aagttcaagtttagcgtaccattaactgaccgacgcaaacgagttcagtttgttaaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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