Vollenhovia emeryi: 105558636
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Entry
105558636 CDS
T06016
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105558636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vem03400
]
105558636
Enzymes [BR:
vem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105558636
DNA repair and recombination proteins [BR:
vem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105558636
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT_3
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
105558636
NCBI-ProteinID:
XP_011861813
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MATDLEAKIEFKQLCVTLEGIAKAREAKKKEQILQKFITECQSIGNKLKVEYPESNVSLY
PILRLILPHLERQRGPHNLKQASLTKLYANVYGFARNSDSYNKLANYREHTSGEFMGNDF
ADRAYCVLDKKLPRNSSGFTIARINTFLDGISGKSVTMQQKVETFRVLFRQITGFEMKWL
TRIVLKDLRLGIGTQKILHIYHPDANDKFLVTNDLRDICDQLYDPKVKLKRGIQLFSHFK
PMLLERCNVENIDKLFRGNNLYYVQTKYDGERSQLHMKDGMFKYFTRRGFDITNNSGYGE
TGSSGFLTAVFTRRLNPNCHSFILDGELMAWHKEKKMFSTKGMNIDVKHLSANSRHQPCF
VAFDVILHNNVLLVDTPYEERLKLLTENRIFTEEEGSLIVSRSTLVSNREELLEAFNTCL
RDDEEGLVVKKCNMKYKPNIRDGGGGYKIKAEYSDNLIQDIDLIILGGYYGEGKYAGRIK
SFMMGVAASPASNEGANPSQFLAISSVSSGIGDEMLRHLETKLAPYWIKEHPENVEGPKR
HQPDVWIHPEHSIILTIRATEMVRSNEYPTGYSLRFPRVTNARTDKPWYNPCTTCELLSL
VKGGKMIQKLTKREATLCDIDQASVPKLRKTTSRRKSMERDVYSKRVVPLTRLLDGKEIC
VINGTDESPKEQIEQILQQHSAKIVQNPMNTTFCVIVGNDKTMRGKEVINSGRYDVVTLD
WFKRLVSRSDWATFDDFLPWELLCSRDITNHKVAENYDEYYDNFTVDADEESLKRSFGRI
ARSNIFELSADKQFTIEQEREMDEQLFGSTSPYSLFRDIIGFFENQSCCAKYKFRFMSGT
VKDNIDDSVTHAFVEDTSGTSIVVKARERKHIQIVKCKWIEKCFQNGRLCEITDYLVDY
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggccactgatttagaggccaagattgaatttaaacaattgtgcgttacattggagggt
attgccaaggcacgtgaagcaaaaaagaaggagcaaattttgcaaaagtttatcaccgag
tgtcaaagtatcggcaacaaactgaaagtagaatatcctgaatcgaacgtatcgctctat
cccatactgagattaatcttgccccatcttgaacgacagcgtggaccacataatttgaag
caagcttcgctgacgaagctttacgctaatgtatatggctttgcacgaaatagcgacagt
tataacaagttggcaaattaccgagaacacacgtcgggcgaatttatgggaaatgatttc
gctgatcgagcttactgcgtattggataaaaagttgcctcggaacagtagcggattcacg
atcgcacggatcaacacgttcctcgatggtatctctgggaagagcgtaacgatgcaacag
aaagtcgaaacctttagagtactttttcgacagattacgggattcgagatgaaatggctg
acgcgtatcgtccttaaagatttacgacttggtataggcacgcaaaaaatactgcacatc
tatcatccagatgcgaatgacaaattcctcgtgacgaatgatctacgcgacatttgtgac
cagttgtacgatcctaaggtgaaattaaaacgcggcatacaattattctcgcattttaaa
cctatgctcttggagagatgcaacgtcgagaatatcgacaagttatttcgaggcaacaac
ttgtactacgtacaaactaaatacgacggcgagaggtcgcaactccatatgaaggatgga
atgtttaaatactttacgcgtagagggttcgatattacaaacaattctggatacggagaa
accggatcttcgggcttcttaaccgcggtgtttacgcggcgtcttaatccgaattgtcat
tcctttatactggatggagaattaatggcttggcataaagagaaaaagatgtttagtaca
aaaggtatgaatatcgatgtcaaacatttgtcggcgaacagccgccatcagccgtgtttc
gtcgcgtttgacgtcattctgcacaataacgtcttgctcgttgatacaccttacgaagag
agattaaaacttctcaccgaaaaccgtatattcaccgaagaggaaggttctttaatcgtg
tctcgatctactttagtttcaaacagggaggagttgctagaagcattcaatacatgtcta
cgtgatgacgaggaaggacttgtcgttaagaaatgtaacatgaaatataaaccaaatatt
cgagatggcggcggtggttataagattaaagcagagtattccgacaatttaatacaagat
atagacctcattatacttggcggttattacggggagggtaaatatgcaggaagaatcaag
agttttatgatgggcgttgccgcgtcgccagcgagcaacgagggggcaaatccgtcgcaa
tttctcgccatctcatccgtgagcagtggaataggagatgaaatgttgcgtcatcttgaa
acaaaacttgcaccgtattggatcaaggaacatcctgaaaatgtcgagggtcccaagaga
catcagccggatgtatggattcatccagagcattccatcattttaacgatacgagcgacc
gaaatggtacgcagcaatgaatatccaactggatacagtttacgatttcctagagttacg
aatgcgaggacggataagccatggtacaatccgtgcaccacttgcgaactcttgtcgttg
gtcaaaggtggaaaaatgatccaaaagttaaccaagcgagaagctactttatgcgatatc
gatcaagcgtcagtccctaaattacgaaaaacgacaagtcgaaggaaatcgatggaacgt
gacgtgtacagcaagcgagtggtgccactcacgcgactattggacggaaaagaaatttgc
gtgattaatggtaccgatgaatcaccgaaagagcagattgaacaaatactgcagcagcat
agtgccaaaattgttcagaatccaatgaatacaactttctgcgtgatagtaggcaatgat
aaaacgatgcgaggaaaggaagtaataaacagtggacgatacgatgttgtaactttggat
tggtttaaacgtctcgtcagtcgatccgattgggccacgtttgacgactttttaccatgg
gaattattatgcagccgggatatcactaatcacaaagttgcagaaaactatgatgaatat
tacgataatttcactgttgacgcagacgaggaaagtttgaagcgttcattcggcaggatc
gcgagatcgaatatcttcgagctctctgcggacaagcagtttactattgagcaggaaagg
gaaatggacgagcaattgttcgggagtacatcgccttattcgctatttagagatataatt
ggattctttgagaatcaatcgtgttgcgccaaatataaattccgtttcatgtctggtacg
gttaaagacaacattgatgattccgttacgcatgcctttgtggaagacacaagcgggacg
agcattgtcgtgaaagcacgtgagcggaaacatattcaaatcgtaaaatgtaaatggatc
gagaaatgttttcaaaatggccgattgtgtgaaattacagattacctagttgattattga
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integrated database retrieval system