Vollenhovia emeryi: 105570081
Help
Entry
105570081 CDS
T06016
Name
(RefSeq) histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03082
ATP-dependent chromatin remodeling
vem03083
Polycomb repressive complex
vem04213
Longevity regulating pathway - multiple species
vem04330
Notch signaling pathway
vem04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105570081
03083 Polycomb repressive complex
105570081
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
105570081
04350 TGF-beta signaling pathway
105570081
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
105570081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vem03036
]
105570081
Enzymes [BR:
vem01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105570081
Chromosome and associated proteins [BR:
vem03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
105570081
HDAC complexes
Sin3A-HDAC complex
105570081
BRAF-HDAC complex
105570081
REST complex
105570081
SHIP complex
105570081
MiDAC complex
105570081
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
105570081
Heterochromatin formation proteins
Other heterochromatin formation proteins
105570081
Chromatin remodeling factors
NuRD complex
105570081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
105570081
NCBI-ProteinID:
XP_011882428
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MDPVKMSMQPHSRKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYR
PHKATADEMTKFHSDEYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAG
GSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDI
DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDE
SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPF
LMVGGGGYTIRNVSRCWTYETSVALGCEIANELPYNDYFEYFGPDFKLHISPSNMANQNT
PEYLEKIKTRLFENLRMLPHAPGVQVQAIPEDGAVIEDSEAEEKVNPDDRLPQRDLDKRM
QHENEYSDSEDEGEGGRRDNRSYKGSRKRPRLEKGQEAMDTDMKKDEDIKTEPKENEKDE
KANPTNEETKKDGGANP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggatccagtaaaaatgtccatgcagccgcacagcaggaaacgcgtctgctactattac
gacagtgacatcggaaattactattatggccaggggcatcccatgaagccgcatcgcata
aggatgacgcacaatttacttttgaactatggtctctatagaaagatggagatataccgg
cctcataaagccacagcagacgagatgacaaaattccacagcgacgagtacattagattt
ctgagatctataaggcccgataacatgtcggaatacaacaagcaaatgcaacgatttaat
gtaggagaagactgtcccgttttcgatggtttgtacgagttttgtcaattatcagccggc
ggatccgtagcagcagccgtaaagcttaataaacaggcttctgaaatctgcattaattgg
ggcggcggtttacaccacgccaagaagagcgaagcctccggcttttgctacgtgaatgat
atcgtgcttggcatattggaattactgaagtatcatcagagagtcttgtatatcgacatt
gacgttcatcacggcgacggcgtagaagaggctttttatacgacagatagagtaatgaca
gtctcgttccacaagtacggcgaatattttcctgggacaggagatcttcgtgatatcggg
gcgggcaagggaaaatactatgcagtcaacatacctttgagagatggtatggacgatgaa
agctatgagtcgatctttgttcctattatctcgaaagtgatggagacgtttcagccttct
gctgttgttctacaatgtggagctgattcattgacaggcgatcgattgggatgctttaat
ttaaccgtgaggggtcacggtaaatgcgtggagttcgtgaaaaaatataatctgcctttc
ctgatggttggcggtggtggttacaccattagaaacgtgtcaagatgttggacatacgaa
acatcggttgctctcggatgcgagatcgctaatgagcttccatataatgattacttcgaa
tattttggcccagacttcaaattacatattagtccatcaaacatggcgaatcaaaacact
cctgaatatctggaaaaaattaaaacgaggctgttcgaaaatttaagaatgttgcctcat
gcccctggcgtgcaagtgcaagccataccagaggacggagcggttattgaggattcggaa
gctgaagaaaaggtcaatccggacgacagattgcctcagcgcgatttagataaaagaatg
caacatgaaaacgaatatagtgatagtgaagacgaaggcgaaggcgggcgaagagacaat
aggtcgtacaagggatctaggaagcgtcctcgtttggaaaaaggtcaagaagctatggat
actgatatgaagaaagacgaagatataaagacggaaccaaaagaaaatgaaaaggacgag
aaggcaaacccaacgaatgaggagactaagaaagacggcggggcgaatccctga
DBGET
integrated database retrieval system
