Vibrio fluvialis: AL536_08195
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Entry
AL536_08195 CDS
T04379
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vfl
Vibrio fluvialis
Pathway
vfl03410
Base excision repair
vfl03430
Mismatch repair
vfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL536_08195
03430 Mismatch repair
AL536_08195
03440 Homologous recombination
AL536_08195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfl03400
]
AL536_08195
DNA repair and recombination proteins [BR:
vfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AL536_08195
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AL536_08195
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL536_08195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AMF93518
UniProt:
A0A0X8LK97
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All DBs
Position
2:113895..115634
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AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLAQLPETIPALLRRIYLNRGVESVEQLEKAAKALHSYTQLHGIDAAVEL
LFEAIKQQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVE
QALAMNAEMIMTVDNGVSSIEGVRFAKQHGLQVLVTDHHLPGSQLPDVDAMVNPNLQQCA
FPSKALAGVGVAFYLMMALCVHMRKCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFG
VELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQ
RDWHQGVIGILASRIKEQFHRPVIAFADGGDGLIKGSCRSVAGLHMRDALDKIDTQNPGI
ILKFGGHAMAAGLTIEEKNFERFSRLFDEVVRQDLDEALLKGVILTDGELTPEEFSMHVA
EMLRAGGPWGQAFPEPVFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNIMIDGIAFNVD
LRRWPDASVKIVRLAYKLDINEFRGNQSLQLMVDHIEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaattcaacgacgacctgagccggatctggctcaacttcccgagaccattcct
gctttgttaagacgcatctacctcaaccgtggtgttgagagcgtcgaacaactggagaag
gccgcgaaagcgctgcactcttatacccaactgcacggcatcgatgcagctgttgaactc
ctgtttgaagcgattaagcagcagaagcgcatcatcgttgttggcgattttgacgccgac
ggcgcgaccagttctgcgttgtcagttctggcactgcgtatgctcggcagccacaacgtc
gattatctggtgcccaatcgttttgaagacggttatggcctgagcccggaagttgtggaa
caggcattggcgatgaatgccgaaatgatcatgacagtcgataacggcgtctcctcgatt
gaaggggtacgctttgccaagcaacacgggctacaggtgctggtgaccgatcaccactta
ccaggctctcagttgccggatgtcgatgccatggttaaccccaatctgcagcagtgtgcg
tttccctcaaaagctttagccggggtgggtgtggcgttctacctgatgatggcgctgtgc
gttcacatgcgtaagtgcggctggtttgctgaacagggcatggcggaacccaagctgatg
gaactgattgatttggtggccttaggcacggttgccgatgtggtaccgctggatgaaaac
aaccgcattctggtgcaccaaggcttgcagcgtattcgcgctggtaaagctcgcccgggg
attcaggcgctgattgaagtggccaaacgcgatgcgcgtaaactggtcgcgtcagatttt
ggttttgcgctggggccgcggattaacgctgcagggcgtcttgacgatatgtcgtttggc
gtcgagctgctgctgtgtaacaacattcacgctgcgcgccgtatggccagtgaattggat
ggtctcaatcagacgcgtaaagagattgaagagggcatgaagcaagaagcgatggcgttt
tgtgaacgtctgcagtttggtaaagacaccgaactgccgcacggcctggtgatgtttcag
cgtgactggcatcagggcgtgattggcattctcgcttcgcgtattaaagagcagttccat
cgtccggtgattgcgtttgctgatggcggcgatggtctgattaaaggttcctgccgttcg
gttgctggtctgcacatgcgtgatgcgctggataaaattgatacgcagaatccaggcatt
attcttaagtttggtggccacgccatggcggccggattgacgattgaagagaagaacttt
gagcgtttcagccgactgtttgatgaagtggtgcgtcaggatctcgatgaagcgctgctt
aaaggtgtgattctgaccgacggcgaactgacgccggaggagttctctatgcacgtggcg
gaaatgctgcgcgctggtggtccatggggacaggcgtttcctgaaccggtatttgatggt
gagtttaaagtgctgcatcagaaactggtcggggagaagcatctcaaattgatgctggag
ccgctgtataaaggccacccgaccaacatcatgatcgatggcatcgcgttcaacgttgac
ctgcgccgttggccggacgcatcggtgaaaatcgtacgcctcgcttataaactcgatatc
aatgagtttcgtggtaatcaatccttgcagctgatggttgatcacatcgaagccaaataa
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