Vibrio fluvialis: AL536_15355
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Entry
AL536_15355 CDS
T04379
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vfl
Vibrio fluvialis
Pathway
vfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL536_15355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfl03400
]
AL536_15355
Enzymes [BR:
vfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL536_15355
DNA repair and recombination proteins [BR:
vfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL536_15355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMF94823
UniProt:
A0A0X8LMR7
LinkDB
All DBs
Position
2:1659249..1662710
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AA seq
1153 aa
AA seq
DB search
MTKQTLLSLPAATGAGDKKHVGNLHGASLALAIAELANQHNGHTLLAVPDPQTALKLLQE
IEQFSQAAVALFPDWETLPYDNFSPHQEIISDRISRLYQLPSLTRGITIVPVSTLLQRQT
PRDFLLQHTLMVKRGDLFSLDKLRVQLEISGYRHVDQVFGPGEYASRGSILDLFPMGSAD
PYRIDFFDDEIDTIRTFDPENQRSIEEIGEICLLPAHEFPTTEQAIEEFRTRWRGRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFDHTETLFDYLPSGSQLLSVGQLENAIDHFLKDV
DYRYDQRKIDPLRPLLPPEELWLKKDELFARFKALPQVQLSVEPVEEKAGRVNPRLQPLP
DLAVQHQNKEPLAALRQFCESFAGKVIFSVESEGRREALLELLQRIKLRPQSKADFMQAY
QNDDKFALVLGSAERGFIFGDHQLALICESDLLGDRVIQRRKKERKATNSDAIIRNLAEL
KPGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKRELKPGYKFQLDRDQYATFKSGF
PFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSD
IKFADLGLLVVDEEHRFGVRQKEKVKGMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRMAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVESIDKVAADLEKLIPEAR
ITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLEAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSIGFTLYMEMLEQAVEALKSGKEPSLGDLLREQTEIEMRIPALLPDDYI
PDINTRLSMYKQIASVADSDELTELKVELIDRFGKLPDAALNLLAIADLKLNAARLKIRK
IEAHEKGGYIEFYPNADINPMFLVKLLQSQPKKFAMEGPTKFKFALPLVDRRERIQFVAD
MLSEFQQNLLPAA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaaactttactctctctgcctgccgctactggagcgggagacaaaaaacac
gttggtaatcttcatggtgccagtctggcgctggccattgccgaattggccaaccagcac
aacggccatactctgctcgcagtgcctgatccacaaacggcgcttaagctgctgcaggag
attgagcagttcagtcaggcagcggtggctctgtttccggattgggaaaccctgccgtac
gataacttttcgccgcaccaagaaatcatttccgaccgaatttcccggctctatcaactg
ccttcgttaacgcgcggcattactatcgtgccggtgagcacactgttgcaacgtcaaaca
ccgcgcgattttctgttacaacacacgttgatggtcaaacgcggagacctgttctcgtta
gataagctgcgagtgcagttggagatttccggttaccgccatgtcgatcaagtatttggt
ccgggcgaatacgccagccgtggctcgattctcgatctgttcccaatggggagcgccgat
ccgtaccggattgacttcttcgatgatgaaatcgacaccattcgtactttcgatccggaa
aaccagcgttcgattgaagaaatcggtgaaatctgtctgttaccagcacatgagtttccg
accaccgagcaggcaattgaagagttccgtacgcgatggcgcggccgctttgaagcgcgt
cgcgagcccgaatctgtctatatgcaggtttccaaaggtacgtggccggcggggatcgaa
tactggcagccgctgttttttgaccacaccgaaacgctttttgactatctgccttcaggc
agccagttgttgagtgtcggccaactcgaaaacgccatcgatcattttcttaaagatgtg
gattaccgttacgaccaacgcaaaatcgacccgctgcgcccactgctgccaccggaggag
ctgtggctgaaaaaagacgagctgtttgcgcgttttaaagctttgccccaggtgcagttg
agtgttgaaccggtggaagaaaaagctggtcgagtcaatccacgtctacaaccactgcca
gacctggcagttcaacatcagaacaaagaaccactggccgctctgcgccagttctgcgaa
agttttgccggaaaagtgattttctcggtagagtctgaaggtcgccgcgaagcactactg
gaactgctacaacgcatcaaacttcgtccgcagagcaaagccgactttatgcaggcttat
cagaatgacgataagtttgcgttggtgttgggctcggcagagcgcggctttatctttggc
gatcatcagcttgcgttgatttgcgaaagcgatttactgggtgatcgcgttattcaacgc
cgcaagaaagagcgcaaagcgaccaacagtgatgccatcatccgcaatctggctgaactc
aagccagggcagcccgtggtgcatattgatcacggtatcggtcgttatgtcggcctgcaa
accctggaagctggcggtatgaccaccgaatatgtgacgttggagtatcagaacgacgcc
aagctttacgtgccggtttcgtcgttgaatctcatcagccgctattccggcggtgccgaa
gagagtgcgccactgcataaactcggtggagaagcatgggtaaaagcgcgccgcaaggca
gcggagaaagtgcgtgacgttgcggcggagctgctggatgtatacgccaaacgtgaactg
aaacctggctataaattccaactcgatcgcgatcagtacgcgaccttcaaatcgggcttc
ccattcgaagaaaccgacgatcaggcaatggccattaatgcggtgatgtcggatatgtgt
cagccgaaagccatggaccgtctggtgtgtggtgacgtgggctttggcaaaaccgaagtc
gccatgcgcgccgcctttgtcgccaccgacaacggaaaacaagtggctgtgttagtaccg
accaccctgctcgctcaacaacattttgaaaacttccgcgaccgttttgctaacctgccg
attcgggtagaagtgctatcgcgctttaaatcggccaaagaacagaaagccattttgcaa
gacgtggcggacggcaaagtggacatcgttgtcggcactcataagctgctttcgagcgac
atcaagtttgccgatttgggcctgcttgttgtcgacgaagaacaccgtttcggcgtgcgc
cagaaagagaaggtcaaaggaatgcgcgccgacgtcgatattctgactttgaccgcaaca
ccgattccgcgaaccctcaatatggcgatgagtggcatgcgtgatctgtcgatcatcgca
accccaccggctcgtcgtatggcgatcaaaacctttgttcgtcagagtgaagacagcgtg
atccgcgaagccgtactgcgtgaaatcatgcgtggtggtcaagtttacttcctgcataat
caggtggaaagcatcgataaagtggccgccgatctggaaaaactgattccggaagcacgc
attaccgtcgcgcatggccagatgcgcgagcgcgaattggaacgcgtgatgaacgatttt
taccatcagcgcttcaacctgctggtgtgtaccaccatcattgaaacgggcatcgacgtg
ccgaccgccaacaccatcatcatggatcgcgccgattcattaggtctggcgcagttacac
cagttacgtggacgcgtcggtcgttctcaccatcaggcttacgcctacctgctgacgccg
catccgaaagcaatgaccaaagacgcgataaaacggcttgaagccattgcctcgttggaa
gatcttggcgcgggctttactctggcgactcacgatctggaaattcgcggcgcgggtgaa
ttgcttggcgatgagcagagcggtcagattcagtcgattggttttacgctgtacatggaa
atgctggagcaagccgtcgaagccttgaagtcaggcaaagagccgtccttgggcgatctc
ttgcgtgagcaaaccgaaattgaaatgcgaattcctgcgttgctgcccgatgactacatt
ccggacattaacacccgcttgtcgatgtacaagcagatcgccagcgtagctgacagcgat
gaactgacggaactgaaagtcgagctgattgaccgctttggcaaattgccggacgctgcg
ctcaacctgctggcgattgccgatctcaagctcaacgccgcacgactcaaaatccgcaaa
attgaggcacatgagaaaggtggttacattgagttctatccgaatgctgacattaaccct
atgtttttggttaaactactgcaatcgcaaccgaagaaattcgctatggaagggccgacc
aagtttaaatttgccttacctctggtcgatcgcagagaaagaattcaatttgttgcagac
atgttgagtgaattccagcaaaatctacttccagcagcctga
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