Aliivibrio fischeri MJ11: VFMJ11_A0509
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Entry
VFMJ11_A0509 CDS
T00754
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VFMJ11_A0509 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_A0509 (mfd)
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VFMJ11_A0509 (mfd)
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VFMJ11_A0509 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
MFD_D3
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
Helicase_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACH64037
UniProt:
B5ETP0
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All DBs
Position
II:complement(577882..581337)
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AA seq
1151 aa
AA seq
DB search
MPIKNLLSLSLPTKANDTRSVGNLTGSSLALAIAEIEQQHQGPIIVAVTEPQLAFRLQNE
INQFSQNAVDVFPDWETLPYDSFSPHQDIISDRLSRLYHLPQQKNGTLIVPVSTLLQRQS
PQSFLHKHALVVNVGDRLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSIIDLFPMGNGH
PFRIDFFDDEIDSIRQFDPENQRTIEEVKSINLLPAHEFPTDDEAIEDFRIRWRQRFDAR
REPESVYQQISKGAWPAGVEYWQPLFFDETETLFDYLPDNTLLVTIGDIEKAADDFLADA
EYRYDQRRVDPLRPLLPVNELWLNTADMFALFKQYPRVKLSKEPEKEKAGRFNPDLLELP
EIAIQHQNKEPFAQFRQFYEKFSGQVIFSVESEGRREALLELLARIKLKPAICETMKEAM
SHKNKATLVIGSAERGFILQDPCVAFICESDLLGERVIQRRRRGDKQSASSDTIIRNLAE
LKIGQPVVHLDHGIGRYMGLQTLDVGDMPAEYMMLEYQDQAKLYVPVSSLNLISRYSAGA
DETAPIHKLGGEAWTKARRKAAEKVRDVAAELLDVYAKRAIKPGFAFKQDREAYADFKAS
FPFEETHDQDIAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATHNEKQVAVLV
PTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQD
SIKFDDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAIKTFVREKADDVIKEAILREIKRGGQVYVLHNNVDTIQNAAEEIEKLIPEA
RVTLAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKALSKDARKRLDAIASLEDLGAGFTLATHDLEIRGAG
ELLGDGQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRLPSLIPEDY
IPDVNTRLSLYKRIASVSSNGELDELKVEIIDRFGTLPEATQTLLISSEVKMLAASLKVK
KLEAHGNGGYIEFEPTADINPMFLVSLLQKDPTGFALDGPTKVKFIKDLTERQTRIKYVM
DLLKLFNENRI
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctattaaaaatttactgtctctctcgttaccaactaaagcgaatgatactcgctct
gttggtaatcttactggttcttctcttgctctcgcgattgctgagatcgagcagcagcac
caaggacctatcatcgttgctgttactgagcctcaattggcatttcgtttacaaaatgaa
attaaccagttttctcaaaatgcagtagatgtttttcctgattgggaaaccttgccttat
gacagtttttcaccgcatcaggatatcatttcagatcgtctatcgcgcctgtaccatctt
ccacaacagaagaatgggactctgatcgttccagtaagtacattattacaacgtcagtct
cctcaatcgtttcttcataaacacgcattagtggttaacgttggcgatcgactgtcgttt
gacaaattaaagctgcaattggaaaagtctgggtacctacatgtcgatcaagtaatgagt
catggtgaatatgcaagccgtggttccattattgatcttttcccaatgggtaatggtcac
ccatttagaatcgacttttttgatgatgaaattgattcgatccgtcaatttgatcctgaa
aatcaacgcacgattgaagaagttaaatcgatcaacctattgccagctcatgaatttcca
accgatgatgaagcaatagaagatttccgtattcgttggcgtcaacgctttgatgctcga
cgtgaaccagaatcggtatatcaacaaatcagtaaaggtgcatggcctgctggtgtcgaa
tattggcaaccattattttttgatgagacagaaaccttatttgattacctaccagacaac
acattattggttactattggtgacattgaaaaggcagccgacgatttcttagccgatgct
gaatatcgatatgatcaacgtcgagttgacccacttcgccctcttcttcctgttaatgaa
ctttggctaaataccgccgatatgtttgctttatttaagcagtatccgcgcgtaaaactc
tctaaagaaccagaaaaagaaaaagcaggtcgttttaatcctgatctgcttgagctacct
gaaattgcaattcagcatcaaaacaaagaaccgtttgctcaatttcgtcaattttacgag
aaattcagtggacaagttatcttctctgttgaatcagaaggtcgccgtgaagcgttatta
gaactattagctcgcattaagctcaaacctgcaatttgtgaaaccatgaaagaagccatg
tcgcataaaaacaaagcgacattggttatcggctctgccgaacgtggttttattcttcaa
gatccgtgcgtagctttcatctgtgaaagtgatttattgggtgagcgtgttatacagcgc
cgccgtcgtggtgataagcaatctgctagcagcgacaccattattcgcaaccttgctgag
ctaaaaattggacaacctgttgttcacttagaccacggtattggtcgttacatggggctt
caaaccctagatgttggtgacatgccagcagaatacatgatgcttgagtaccaagaccaa
gccaaattatacgttcctgtgtcttcattgaacctcatcagccgctattctgccggagct
gatgaaaccgcccctattcataaattaggcggtgaagcgtggaccaaagcacgtcgtaaa
gccgcagaaaaagtacgtgatgttgctgcagaactattagatgtatacgcaaagcgcgct
attaagcccggttttgccttcaaacaagatcgtgaagcttatgctgattttaaagcgagc
ttcccatttgaagagacgcacgatcaagacattgcgattaatgccgtcttatcagatatg
tgccaagctaaagctatggatcgccttgtgtgtggtgatgtaggctttggtaaaacagaa
gttgccatgcgtgctgctttcttagctacacacaatgaaaaacaagtggcggtattggtt
ccgacaaccttacttgctcagcaacactttgaaaacttccgagatcgttttgcgaatttc
cctattcgtgttgaagtactttctcgctttaaatcggccaaagagcaaaaagaaatccta
gcagcaaccgctgaaggtaaagtagatattctgatcggcacacataaattactgcaagat
agcatcaaatttgacgatttaggcttacttattgttgatgaagaacaccgctttggtgtg
cgtcaaaaagagaaagtaaaagccatgcgtgccgacgttgatattttaacgctaacagca
acacctatcccacgtacattgaatatggcaatgagtggtatgcgtgatctctctatcatt
gctacaccaccagctcgacgcttagctattaaaacgtttgttcgtgaaaaagccgatgat
gtgattaaagaagccatcctgcgtgaaattaagcgtggtggccaagtgtatgtactgcac
aacaacgttgatacgattcaaaatgcagcagaagagattgaaaaactgatcccagaagct
cgtgttactttggctcatggtcaaatgcgtgagcgcgagctagaaaaaatcatgggggat
ttttaccaccaacgctttaatgtgcttgtttgtaccaccattattgaaaccggtattgat
gtaccaacagccaacaccattattatggatagagctgacaagctaggtttagcacaacta
caccaattacgaggccgtgttggacgttcgcatcaccaagcgtatgcgtatttattaaca
ccgcatcctaaagcgttaagcaaagatgcaagaaagcgtttagacgcgattgcttcactt
gaagatctaggtgcaggctttaccttagcaacacacgatttagaaattcgtggtgcaggt
gaattgttgggtgatggtcaaagtggtcaaattcaatctgttggctttacgctttatatg
gaaatgttagagcaagccgttgaagcattaaaagaaggtaaagaaccctctttagatgat
ctactgcgtgaacaaaccgaagttgaactgcgtttaccatcgttaattccagaagattac
ataccagatgttaatactcgcctatctttatataaacgtattgcaagtgtatcaagcaac
ggtgaattagatgaactgaaagtagaaatcattgaccgattcggcactctaccagaagca
acgcaaacattgttgatcagctcagaagtgaaaatgttagccgcttcattaaaagtgaag
aaattagaagcacatggtaacggtggttacattgaatttgaacctactgctgacataaac
cctatgttccttgtgtcattattacagaaagatcctacgggttttgctctagatggccca
accaaagtcaaatttataaaagacttaacagagagacaaacacgaattaaatacgtaatg
gacttgctcaaactgttcaacgaaaatagaatctag
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