Vibrio furnissii: vfu_A02395
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Entry
vfu_A02395 CDS
T01680
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vfu
Vibrio furnissii
Pathway
vfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
vfu_A02395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfu03400
]
vfu_A02395
Enzymes [BR:
vfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
vfu_A02395
DNA repair and recombination proteins [BR:
vfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
vfu_A02395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADT87524
LinkDB
All DBs
Position
1:2486214..2489591
Genome browser
AA seq
1125 aa
AA seq
DB search
MALAIAELANQHQGHTLLAVPDPQTALKLLQEIEQFSQANVALFPDWETLPYDNFSPHQE
IISERISRLYQLPSLSQGITIVPVSTLLQRQTPRDYLLQHTLMVNRGDRFSLDKLRVQLE
NSGYRHVDQVFGPGEYASRGSILDLFPMGSADPYRIDFFDDEIDTIRTFDPENQRSIDEI
DAIRLLPAHEFPTTEQAIEEFRTRWRGRFEARREPESVYMQVSKGTWPAGIEYWQPLFFD
HTETLFDYLPAGSQLLSVGQLENAIDNFLSDVDYRYDQRKIDPLRPLLPPDELWLKKDEL
FARFKTLPQIQLSLAPVEEKAGRVNPRVQPLPDLAVQHQNKEPLAALRQFSESFAGKVIF
SVESEGRREALLELLQRIKLRPQSKADFMQAYQSDDKFSLILGSAEHGFIFGDQQLALIC
ESDLLGDRVIQRRKKERKVTNSDAVIRNLAELKPGQPVVHIDHGIGRYVGLQTLEAGGMT
TEYVTLEYQNDAKLYVPVSSLNLISRYSGGAEESAPLHKLGGEAWVKARRKAAEKVRDVA
AELLDVYAKRELKPGYKFQLDRDQYATFKSGFPFEETDDQAMAINAVMSDMCQPKAMDRL
VCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSR
FKSAKEQKAILQDVADGKVDIVVGTHKLLSSDIKFADLGLLVVDEEHRFGVRQKEKVKAM
RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAIKTFVRQSEDSVIREAVLRE
IMRGGQVYFLHNQVESIDKVAADLEKLIPEARITVAHGQMRERELERVMNDFYHQRFNLL
VCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKD
AVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSIGFTLYMEMLEQAVEA
LKSGKEPSLDDLLREQTEVELRIPALLPDDYIPDINTRLSMYKQIASVADSDELTELKVE
LIDRFGKLPDAALNLLAIADLKLDAARLKIRKIEAHEKGGYIEFYPNADINPMFLVKLLQ
SQPKKFAMEGPTKFKFALPLVDRRERIQFVADMLNEFQQNLLPAA
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
ttggcgttagccattgccgagttggccaatcaacatcaaggccacacactgcttgccgtg
ccggatccacaaacggcactcaaactgttgcaggaaattgaacagttcagtcaagcaaac
gtcgccctgttccccgattgggaaacattgccgtacgataatttctcaccgcatcaagaa
atcatttctgaacgtatttcgcgcctgtatcaactgccgtcgctgtcgcaaggcattacc
attgtgccagtgagcacactactgcaacgtcaaacgccgcgcgattatctgctacaacat
accttgatggttaaccgaggcgatcggttctcattagataaattacgcgtgcaacttgaa
aattctggctatcgtcatgtcgaccaagtctttggcccgggtgaatatgccagccgtggg
tcgattctggatctgttccccatgggcagtgcggatccgtatcgcatcgacttcttcgat
gatgaaatcgacaccattcgcacctttgatcccgagaatcaacgttccattgacgagatc
gacgcgatccgcctgctgcctgcgcatgaattccccaccaccgaacaggcgattgaggaa
ttccgtacccgttggcgcggccgatttgaagcgcgtcgcgagccagaatcggtctacatg
caagtgtccaaaggcacttggccggcggggattgaatattggcaaccgctgttttttgac
cacaccgaaactctttttgattacctgcccgctggcagtcaactgctgagtgtcggccag
ttagaaaacgcgatcgacaacttcctcagcgatgtcgactaccgctacgatcaacgcaaa
attgatccgctgcgtccgctgttgccgcccgatgaattgtggctgaaaaaagatgagctg
tttgcgcgctttaaaacgctgccacaaatccaactcagcttagcgccggtagaagagaaa
gccggacgcgtgaatcctcgcgtgcaacccctgcccgatcttgcggtgcagcatcagaac
aaagaacctctggctgccctgcgccaatttagcgaaagctttgccggtaaagtgattttc
tcggttgaatcggaaggtcgccgtgaagccctgcttgaactgctgcaacgcatcaagctg
cgcccgcaaagcaaagctgattttatgcaagcctatcagagcgacgataagttctcgctg
atcttgggctctgccgaacacggttttatcttcggtgatcagcaactggcgctgatttgc
gaaagcgacttgttgggcgatcgcgtcattcagcgacgcaagaaagaacgcaaagtcacc
aacagcgatgctgtgattcgtaacctggcagaactgaaacctggtcaaccggtggtacat
atcgatcacggcattggccgctacgtgggtttgcaaacccttgaagcgggtggcatgacc
accgaatatgtcacgctggaatatcaaaatgacgccaagctctacgtgccggtttcgtcg
ctaaacctcatcagccgttactctggcggcgccgaagaaagtgcgccgctgcataaattg
ggcggtgaagcttgggtgaaagcgcgccgtaaagccgccgaaaaagtgcgagatgtggcc
gcggagctgctggatgtatacgccaaacgtgaactcaaaccgggttataaattccagctc
gatcgcgaccagtacgccacgtttaaatcgggtttcccatttgaagaaaccgacgatcaa
gcaatggcgattaacgccgtgatgtcggacatgtgtcaacccaaagcgatggatcgtctg
gtgtgtggtgatgtgggctttgggaaaaccgaagtcgcaatgcgcgctgcgtttgttgcc
accgataacgggaaacaagtggcggtgttggtcccgacgaccctgcttgcccagcaacat
ttcgaaaatttccgcgaccgttttgccaacctgcccattcgcgtggaagtgctatcgcgc
tttaaatcggccaaagaacagaaagccattttgcaagacgtggccgacggtaaagtagac
attgtcgtcggtacccacaaactgctttcgagcgacatcaagtttgctgatttgggttta
ctggttgtcgatgaagaacaccgttttggtgtgcgccagaaagagaaagtcaaagcgatg
cgtgcggacgtcgacattctcaccctcacggccacgccgattccgcgaacgctgaacatg
gccatgagtggcatgcgcgatctgtcgatcatcgccacgccacccgcgcgccgtatggcg
atcaaaacctttgttcgtcaaagcgaagacagcgtgatccgcgaagccgtactgcgtgag
atcatgcggggtggtcaagtgtacttcctgcacaaccaagtcgaaagcatcgacaaagtc
gctgcagatctggagaaactaatcccagaggctcgtatcacggtggcccatgggcagatg
cgtgagcgcgaattggaacgcgtgatgaacgacttctaccaccagcgttttaacctgttg
gtgtgtaccaccatcattgaaaccggaatcgacgtaccaaccgccaacaccatcatcatg
gatcgcgccgactctttgggcttagcgcagttgcaccagttgcgtgggcgcgtgggtcgt
tcgcatcatcaagcatacgcgtacttgctgacgccgcatccgaaagcgatgaccaaagat
gcagtgaaacgccttgaagcaatcgcctccttggaagacctcggtgcgggctttaccctc
gctactcacgatttggaaattcgcggcgcaggtgaactgctgggcgatgagcaaagcggt
cagattcagtcgattggttttacgctctatatggagatgctggaacaagcggttgaggca
ttgaagtccggcaaagagccatcgttagacgacctgctgcgcgagcaaacggaagtggaa
ctgcgaattcctgcactgctgccagatgattacattccagacatcaacacgcgtttgtcg
atgtacaagcagattgccagcgtcgctgacagcgacgagctcaccgaactgaaagttgag
ctcattgaccgctttggtaaactgccggatgcggcgctgaacttactggccatcgccgat
ctcaagctcgatgcggcgcgtttgaaaattcgcaaaattgaagcgcacgagaaagggggt
tacattgagttctatccaaatgctgacattaacccgatgtttttggttaaactactgcaa
tcgcagccgaagaaattcgcaatggaagggccgaccaagttcaaatttgccttacctctg
gtcgatcgcagagaaagaattcaatttgttgcagacatgctgaatgaattccagcaaaat
ctacttccagcagcctaa
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integrated database retrieval system
