Variibacter gotjawalensis: GJW-30_1_00121
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Entry
GJW-30_1_00121 CDS
T05320
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vgo
Variibacter gotjawalensis
Pathway
vgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GJW-30_1_00121 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgo03400
]
GJW-30_1_00121 (ykoU)
Enzymes [BR:
vgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GJW-30_1_00121 (ykoU)
DNA repair and recombination proteins [BR:
vgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GJW-30_1_00121 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAT57614
UniProt:
A0A0S3PPB7
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All DBs
Position
complement(146407..148995)
Genome browser
AA seq
862 aa
AA seq
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MALDTYRKKRDFSKTAEPRGKKKMPKKTGNSFVVQKHAARRLHYDFRLEMDGVLKSWAVA
RGPSLVPGEKRLAVETEDHPLEYGDFEGTIPKGEYGGGSVIVWDRGTWTPEFDADFGYKK
GHLEFELEGEKLSGKWHLVRMARRRGEKRDNWLLIKVEDDAARTASDPDILEESPESVKT
GRVVEDLDGEAPGWSSKTGKIDRKEPAKKAKTSKKKSAKATAEAPGTQAVAPQAVDPSQI
KGAKKAALPNVIPPALASLAEKPPSGDRWVHEIKFDGYRLMVRIEAGRVKLLTRTGLDWT
KRFGKELVAAFQDLPIGKAMLDGEVVVERDNGASDFSALQADLSEGRGDRFIYYAFDLPY
IDGYDLTGANLLDRKAALSQLVGDGSGTIRYSAHFEADGPTVLEHASRLGLEGIVSKASD
APYREGRSKSWLKSKGSLRQEFVIGGYVPSSTSRKAIGALSLGVYEDGKLRHVGRVGTGF
SHKVSEQLFTRLERLRGDSPFAGRLDAVAARGVRYVRPELVADVEFRAWTADGNIRHASF
RGLREDKDADDIVLETGMPKAAKTAKAKSTPDVTLTHPDRVYWPDEGVTKQGLADYYAEV
WDHMAPFIVGRPLALLRSPDGITGKGFFQKHAWKGLNKSIDLVPDPKEKGEEPLIAIHDL
TGLTALVQAAVLEIHPWGSTVKDWEHPDTLILDLDPGDGVSWQEMIAAAHEAKERLEAVG
LAAFVKTSGGKGLHVVSPLKPKGAWPDLKEFTKAMADAMASDSPNKYVSTIAKAKRGGKI
LIDYLRNQRGQTAVAAYSTRARPGAAVSMPLAWDELSSVGPAYFTIVNAPQRLAALKRDP
WATFRKSEAPLAIKTSAKKVRK
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacacctatcgcaagaagcgcgatttctcgaagacggccgagccgcgcggc
aagaagaaaatgccgaaaaagaccggcaacagcttcgtcgtgcagaagcacgctgcgcgg
cgactgcattacgatttccgccttgaaatggacggcgtgctgaaaagctgggccgtcgcg
cgggggccgagcttggtgccgggggagaaacgcctcgccgtcgaaacggaagatcacccg
ctcgaatacggcgatttcgaaggcactatcccgaaaggcgaatacggcggcggcagcgtg
atcgtttgggatcgcggaacgtggacgccggaatttgacgccgacttcggatacaagaag
ggccacctcgagttcgaactcgaaggcgagaagctttccggcaagtggcatctcgtgcgc
atggcgcgacgccgcggcgagaagcgcgacaattggctgttgatcaaggtcgaagacgac
gctgcgcgaaccgcgagcgatccggacatcctcgaagagtcgccagaatccgtgaagacg
ggccgtgtcgtcgaagatctcgacggcgaagcgcccggctggtcgtcgaagaccggcaag
atcgatcgcaaagagccggccaagaaggccaagacgtcgaagaagaagtcggctaaggct
acagctgaagcgccggggacccaggcggttgcgccgcaagccgtcgatccctcgcagatc
aaaggtgcgaagaaagccgcgctgccaaatgtcatcccgccagcgctcgcgtcgctcgcc
gagaagccgccgtcaggcgatcgttgggtgcacgaaatcaagttcgacggctatcgtctg
atggtccgcatcgaagctgggcgcgtgaaactgctgacgcgcacggggctcgattggacg
aagcgtttcggcaaggagcttgtcgcggcgtttcaggatttgccaatcggcaaggcgatg
ctggacggcgaagtcgttgtcgagcgtgacaatggcgcatccgacttctcggcgctgcaa
gccgatctcagcgaaggccgcggcgaccgcttcatctactacgcgttcgatctgccgtat
atcgacggttacgatctgacgggcgcaaatctcctcgatcgcaaagccgcgctctcacaa
ttggtcggcgacggtagcggcaccattcgctacagcgcgcatttcgaggcggacggaccg
acagtactcgaacacgcgagccgcctgggcctcgaaggcatcgtgtcgaaagcatctgac
gcgccgtatcgcgaaggacgttcgaaaagctggctgaaatcgaaggggtcgctccggcag
gaattcgtcatcggcggttacgtgccgtcgtcgacctcacgtaaagcaatcggcgctttg
tcgctcggcgtctacgaggatggcaaactccgccatgtcggccgcgtcggcaccggcttc
tcgcacaaagtctcggagcaactctttacccgcctcgaacgtttgcgcggcgatagtccg
ttcgcgggccggctcgatgcggtcgcggcgcgcggcgtgcgttacgttcgtcccgaactg
gttgcggacgtcgaattccgcgcctggaccgccgacggcaacattcgccatgcatcgttc
cggggtctgcgcgaagacaaggacgccgacgacatcgtcttggagacgggcatgccgaaa
gccgcgaagactgcaaaagcgaagagcacgccggatgtgacgctcacgcatccggatcgc
gtttattggccggacgaaggcgtcaccaagcaaggtctcgccgactactatgccgaagtc
tgggatcatatggcgcctttcatcgtcgggcggccgcttgcgctgctgcgcagcccggac
ggaatcacgggcaaaggatttttccagaagcatgcatggaagggcctcaacaagagtatc
gacctcgtgccggaccccaaggagaagggcgaggagccgctgatcgcgatccacgacctc
accgggctcacggcgttggttcaggcagcggtgctcgaaattcatccctggggttcgacc
gtcaaggattgggagcatcccgacacgctgatcctcgatctcgatcccggcgatggcgtt
tcctggcaggagatgatcgcggccgcgcatgaggccaaggaacggctcgaggctgtcggc
cttgcggctttcgtgaagacttccggcggcaagggcctgcatgtcgtctcgccgctgaag
ccgaagggggcttggccggacctgaaggaattcaccaaggcgatggcggatgccatggcg
tcggacagtccgaacaaatacgtctcgacgatcgcgaaagcgaagcggggcggcaaaatt
ctgatcgattacttgcgaaaccaacggggacagacggcggtcgccgcctactcgacccgt
gccaggccaggggctgccgtatcgatgccgctcgcctgggatgagctatccagcgtcggc
cccgcctactttacgatcgtgaacgcgccgcaacgtctggctgcactcaaacgcgatcca
tgggcaacgtttcgtaaatccgaggccccgctggcgatcaaaacttcagcgaaaaaggtg
cgcaaatag
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