Vallitalea guaymasensis: HYG85_20950
Help
Entry
HYG85_20950 CDS
T07172
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vgu
Vallitalea guaymasensis
Pathway
vgu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYG85_20950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgu03400
]
HYG85_20950
Enzymes [BR:
vgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYG85_20950
DNA repair and recombination proteins [BR:
vgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYG85_20950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Imm44
DUF4901
Motif
Other DBs
NCBI-ProteinID:
QUH32087
UniProt:
A0A8J8MFL1
LinkDB
All DBs
Position
4882779..4883657
Genome browser
AA seq
292 aa
AA seq
DB search
MVDNNKIKISNPDKLLWSELGITKVDYLKYLIYITPYIIKHAKDRFLTTIRYPDGYDKKF
FYQKKVPSYAPEFVDSARWKDGSEYINLNKQATLVWLGNLASLEFHTTFNRIQKPFSPTN
LVFDLDPSEGQVFEQVIEVALNVYDTLNKLNITSYVKTSGATGLQIYIPIGEKYDYNEAR
KISKFFAEYFANKYPELITIERLKEKRGKKLYFDYLQMWEGKSIITPYSPRATKYASVSM
PVKWEEVEAGIKPQDFTIFNALDRIKKVGDIFEPLLDNKNVESFSSILQQIK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggtagacaataataaaataaaaatatcaaatccggataaattattatggtcagagctt
ggtataacaaaagtggactatctaaaatacttaatatatataacaccatatattataaaa
catgcaaaagatagattcttgactactatcaggtatccagacggttatgataaaaaattc
ttctatcagaaaaaagttccaagttatgctccagaatttgttgactcagctagatggaaa
gatggaagtgagtatatcaatcttaataagcaagctactcttgtatggcttggtaatcta
gcttcacttgaatttcataccaccttcaacagaatacaaaaacctttttcgcctactaat
ctagtatttgaccttgatccatcagaaggacaagtctttgaacaggtcattgaagtggct
ttgaatgtatacgatactctaaataagcttaatattaccagttatgtaaaaacttccggt
gcaactggattacagatatatatacctattggggaaaagtatgattacaacgaggctagg
aaaatcagtaaattcttcgctgagtattttgctaataaatatccagagctaataactata
gaaagactaaaagaaaaaagagggaaaaaattatatttcgattatctacagatgtgggaa
gggaagagtatcattacaccttattccccaagagctaccaagtatgcttctgtttcaatg
ccagtgaagtgggaagaagtagaagcaggtatcaagccacaagattttactatattcaat
gccttggataggataaaaaaagtaggggatatttttgaacctttactggataataaaaat
gttgaaagctttagttccatacttcaacaaataaaatag
DBGET
integrated database retrieval system
