Virgibacillus halodenitrificans: BME96_17105
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Entry
BME96_17105 CDS
T04548
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BME96_17105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_17105
Enzymes [BR:
vhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BME96_17105
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BME96_17105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APC49805
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Position
3488630..3490426
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AA seq
598 aa
AA seq
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MPVMKPISSNDIPQGENWLYEIKYDGFRCVIYWNQGEIKLVSKNNKELTKGFPEIVEALY
AVESEMTEVLPITLDGELVILNNDYQGNFSALQKRGRLKNKAAILKAAETRPASFLAFDL
WQQGKENMEKVPYIERKIALESLLATIKVPQLRIVKAFENPNKLWEIIFNYKGEGMIAKR
KRSIYQPGKGHHDWLKIKNWRTFHGFLTTYDKKNNYFTVGVFNGENISTIGKCKHGLDKD
TFSSIAQFFIKNGVEHGESYELPPAICASLHTLDLYKNELREPEFSTLLPNISATECTQQ
KLELDMAMLPQKVELTNTEKIFWPSTGYTKGDLLVYIREIAPYMLPFIKSKALTIIRAPD
GVSNEHFFQKHLPDYAPDFINSSLYENEKLIICDSLDSLIWFANHGAVEYHVPFQYITQT
HPHEIVFDLDPPDRKRFSLAIKAANIIKPMLDELELTSFVKTSGNKGLQIHIPLPSNKLS
YEDTALITQSIAWTVETAYPNLFTTERMKKKRNERLYIDYVQHGKDKTIIAPYSPRRTEE
ATVSTPLFWEEVKEGLEPTCFTVKNMIERVQTLGCPFNDYFKVGENQELDKVLSLIRG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgatgaagcctattagcagtaatgacattcctcagggagagaattggttatat
gaaataaagtacgatggctttcgttgtgttatatactggaatcaaggagaaattaaactg
gtaagtaaaaataataaagaacttacaaagggatttccagaaattgtcgaagcactatat
gcagtagaatcagaaatgacagaagtcctgccgataaccttagatggagaactcgtcatt
ctaaacaatgactatcaagggaatttctccgctctacagaaacgaggtcgcctgaaaaat
aaagcagctatcctcaaagcagctgagaccagacctgcatcttttttagcatttgacctt
tggcaacaaggcaaggaaaacatggaaaaagtcccttatattgaacggaaaattgctcta
gaatctcttttagcaactattaaggtacctcagctacgtatcgtaaaagcatttgaaaac
ccgaataaattatgggaaataatttttaattataagggagaaggaatgattgcaaagaga
aagcgaagtatttaccaaccgggcaaagggcatcatgattggttaaaaataaaaaattgg
cgaaccttccatggttttcttacgacctatgacaagaaaaataattactttactgtagga
gtatttaatggagaaaatataagcactattgggaaatgtaagcatggattggataaagac
acgttctcctccattgcccaattcttcattaaaaatggtgtggagcatggagagagctat
gaacttcctccggccatatgtgcctctcttcatacactagacttatataaaaatgagtta
agagaacctgagttttccacactgttgccaaatatatcagcgactgagtgcacccagcag
aagcttgagctggatatggctatgcttccccaaaaggtggagcttacgaatacagaaaag
attttttggccgagtaccggttatacaaaaggggatttacttgtatacataagggaaata
gccccctatatgcttccgtttattaaaagtaaagctcttacaattattcgcgcaccggac
ggagttagcaatgagcatttttttcaaaagcatctacctgactacgcaccggattttatt
aactccagcctttatgaaaatgaaaagctcattatttgtgactcgcttgattcacttatt
tggtttgcaaatcatggagctgtggaatatcatgttccatttcaatatattacacaaaca
catccacatgagattgtatttgatttagatccaccagatcgaaaaagatttagtttagct
attaaagcagcaaatattattaagccaatgcttgatgaattagagctcacttcctttgta
aaaacctccggaaataaaggtctgcaaatacacattccacttccgtctaataagctatcc
tatgaggatacggcattaatcactcaatccattgcctggacagtggagacagcttatcct
aacttatttacaacggaacgaatgaagaaaaagcggaatgaaaggctctatattgattat
gtacagcatggtaaggacaagactattattgctccatattccccaagaaggacggaagaa
gctacagtttctacccctttattttgggaagaagttaaagaaggattagaaccaacgtgt
ttcacagtaaaaaatatgatagaacgagtacaaacacttggttgccccttcaacgattac
tttaaggttggcgaaaatcaagaactggataaagtattatcacttatacgaggttaa
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