Virgibacillus sp. 6R: BKP57_08565
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Entry
BKP57_08565 CDS
T04596
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vig
Virgibacillus sp. 6R
Pathway
vig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKP57_08565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vig03400
]
BKP57_08565
Enzymes [BR:
vig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKP57_08565
DNA repair and recombination proteins [BR:
vig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKP57_08565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Telomere_reg-2
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
API91877
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Position
1919506..1921314
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AA seq
602 aa
AA seq
DB search
MHVMKPIPSVDIPRGKEWLYEVKYDGYRCTLQWTKELIQLRSKNNTNLSKQFPEIIQACL
QLQEQVESHLPLTMDGELVILNQLYQANFEWVQKRARLQATSSIETASNQRSASFMVFDI
LQHQGESLLSIDLEKRKEYLQLLFTTYPFSQELIYVPSYTNPDQLWKEIFIHLGEGMIAK
RKNSLYKQGNNHQDWYKIKNWRSLSGFLTALDINNDYFQVSVYKHNQIASIGKCKHGLDS
KEMDILRQLFQTKGEQKSNTYILPPAICTAIHSLDLYKQELREPAFKQILPHARPEELTW
EKLQLDQAMFPTEVEITNLNKVFWSKPGYTKADLLLYIRQIAPYMLTFFKRRALTIIRAP
DGIDKEHFFQKHLPTYAPAFMPRHEHKEKHSIVCETLNDLIWLTNHGTVEFHTPFQTIAT
NTPEEIVFDLDPPSRDRFSLAIKAALNMKYLFDELQLISFVKTSGNKGLQVYIPIPSGSM
TYEDTALFTQTIAFTLEGTFPALFTTERFKHKRNDKLYIDYVQHGKGKTIIAPYSPRKTS
EGTVAMPLFWNEVTDDLTPQNFTIKNVVELVKERGCPWQSYEAVKKSQNLEEVLTFLQDH
HR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtcatgaagcctatacccagtgtagatatccccagaggtaaagaatggttatat
gaagtaaaatacgatggctatcgttgcacattacaatggactaaagaacttattcaacta
cggagtaaaaataatacaaatttaagtaaacagtttccagaaattatccaagcctgtttg
cagctccaagaacaagtcgaatcccatttgcccttaacaatggatggagaactcgtcata
ttaaaccaactctatcaagcaaattttgagtgggttcaaaaacgtgccagactacaggca
acatctagcatcgaaaccgcttctaatcaacgttctgccagttttatggtcttcgatata
ctgcagcaccaaggggaatctttgttatcgattgatttggaaaaacgcaaagaatacctc
caactactatttacaacttaccctttctcacaagaacttatatatgtaccaagttacaca
aaccccgaccagctttggaaggaaatctttatacatcttggagaaggtatgatagcaaag
cggaaaaatagtctctataagcaagggaataatcaccaagactggtataaaataaaaaac
tggaggtcgttaagtggctttttaacagctttagatataaataacgattattttcaagta
agtgtatataaacataaccaaatcgcctccattgggaaatgcaagcatgggcttgattca
aaagaaatggatattttaagacaattatttcaaacaaaaggagaacaaaaaagcaatact
tacattttgcctcctgctatttgtacagccatccatagccttgatttatataagcaagaa
ttacgtgagccagctttcaaacaaatacttccacacgcgcgtccagaagaattgacttgg
gaaaagctacagcttgatcaggctatgtttccaacagaagttgaaataacaaatcttaac
aaagtcttctggtcgaaaccaggttatacgaaagcagacctcttgctttatattcggcaa
atagctccttacatgctgacgttttttaaaaggcgtgcacttacaattattcgcgcgcct
gatggaatagataaggaacattttttccaaaaacatttgcccacctacgcacctgctttt
atgccaagacatgaacacaaggaaaaacatagtatcgtttgcgaaacattaaacgacctc
atctggttaaccaatcatggtaccgtagaatttcatacgccatttcaaaccattgcaaca
aatacgcctgaagaaattgtctttgatttggacccaccaagcagagaccgtttttcttta
gcaatcaaagcagctttaaatatgaaatatctatttgatgaattacagttgatctctttt
gtcaaaacttcgggaaataaagggctgcaagtatatatcccgattccaagtggaagcatg
acctacgaagatactgccttattcacccaaaccatagcatttacattagaaggcaccttc
ccagcactattcaccactgaacgattcaagcataaacgtaatgacaagctttatattgat
tacgtccaacatggcaaaggaaaaacgattattgcaccttactcgcctagaaaaacttcg
gaaggaacagtcgccatgcccttattttggaatgaagtaacggatgatttaactccacaa
aactttacgataaaaaacgtcgttgagcttgtaaaagaacggggttgtccatggcaaagt
tatgaagccgtgaaaaaaagccaaaacctagaagaagttttgacttttttacaagatcat
catagatga
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