Viridibacillus sp. JNUCC-6: JNUCC6_02000
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Entry
JNUCC6_02000 CDS
T06874
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vij
Viridibacillus sp. JNUCC-6
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JNUCC6_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vij03400
]
JNUCC6_02000
Enzymes [BR:
vij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JNUCC6_02000
DNA repair and recombination proteins [BR:
vij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JNUCC6_02000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QOV11580
UniProt:
A0A7M2QWA8
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All DBs
Position
415275..415640
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AA seq
121 aa
AA seq
DB search
MFTYDDTCIFSEFVCKFLCEQEPGWFTTERLKKNRNNRLYLDYVQHKAGNTLAAPYSPRG
NEKGLISTPLNWAEVNDSLTPTMFTIPAVIERIQKQGNPFHSFIRTENSQQFTNVLSQLK
T
NT seq
366 nt
NT seq
+upstream
nt +downstream
nt
atgtttacttatgatgatacatgtattttttccgagtttgtatgtaagtttttatgtgaa
caagaaccaggatggtttaccactgaacgattaaagaagaatcggaataacagattatat
ctcgactatgttcagcataaagctggtaatacgttagcagctccttactctcctagaggg
aatgaaaaaggattaatctcaacaccgctaaattgggcagaagtcaacgattcgctaaca
ccaacaatgtttactattcctgccgttatagaacgtattcagaagcaaggtaatccattt
catagcttcattcggacagaaaattcacaacaatttacaaatgttctaagtcaattaaag
acgtag
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