Virgibacillus phasianinus: CFK37_12580
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Entry
CFK37_12580 CDS
T04951
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vil
Virgibacillus phasianinus
Pathway
vil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFK37_12580 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vil03400
]
CFK37_12580 (ligD)
Enzymes [BR:
vil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFK37_12580 (ligD)
DNA repair and recombination proteins [BR:
vil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFK37_12580 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ASK64403
UniProt:
A0A220U9H8
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All DBs
Position
2634267..2636090
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AA seq
607 aa
AA seq
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MKLMQPIPRMQIPTGNEWVYEVKYDGFRCVLHWEKDTIRLFSRNDVELTTNFPEIISFCS
INQAIIEEYLPVELDGEIVIINNEFQANFPAIQKRGRLNKKETIDKAAGIRPATFLAFDL
LRENGSSLMNKTYSERKKELSAFFKSAKFEPSISRLNRLSLIPSYRNADELWEIVFAFKG
EGVIAKKKGSFYGLGKQHTDWLKIKNWRKFEGILTDFDTKNDYFNVKVYDGDQLVDAGKC
KHGVDESEIATLHELFTTKGTKSGSEFRLPPAICAEVNTLDFVKHEIREPSINRILVNTN
AADCTVQKMKVNMAMLPETVEASKINKLFWPEDGVTKGDLLTYLREISPYMLPFLKDRIL
TLIRCPDGVQGEYFFQKHLPDYAPSFITSYPTNDEVFFICNKLETLLWFGNHGALEFHTP
FQTAGSANPAEIVFDLDPPDRERFPLAIQAANILKQMLDDLKLISFVKTSGNKGIQVHIP
IPKDSLTYDETGIFTEAIAMTMENAYPALFTTERLKKNRKERMYIDYVQHAMDKTIINAY
SPRKTNRATVSTPLFWEEVKEGLTPEMFTINNVAERVKTLGCPFTGYNVTGERQQMTNIL
NLLRQKK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagttaatgcaaccaattccccgtatgcaaatccctacaggaaatgagtgggtttat
gaggttaaatatgacgggtttcgctgcgtactgcactgggagaaagatactattcgttta
ttcagcaggaacgacgtggaactaacaactaattttcctgagatcatttctttttgttca
ataaatcaagcgataatagaggagtatctgccggtagagcttgacggtgagattgtcatc
ataaacaatgaatttcaggcaaattttccggctattcagaagcgtgggcggttaaataaa
aaagaaactattgataaggccgcgggaataagaccggcaacatttttagcatttgatctt
ttgcgggaaaatggttcatcattgatgaataaaacatattcagaacgaaaaaaggagctt
tcagcatttttcaaatctgctaagtttgaacccagtatttcacggttaaaccgattaagt
ttgattccgtcctacagaaatgctgatgaattatgggaaattgtatttgccttcaaaggg
gaaggtgttatagcaaagaaaaagggaagtttttacggattgggaaaacaacatactgat
tggttaaaaattaaaaactggcggaagtttgaggggattcttaccgattttgatacaaaa
aacgattactttaatgtgaaggtatatgatggtgatcaactggttgatgctggaaagtgt
aaacatggtgttgatgaaagtgaaattgctacattacatgaactatttaccacaaaaggt
actaaaagtggcagtgaattcagacttccaccggcaatatgtgctgaggtaaatacactt
gattttgttaagcatgaaatacgagaaccatcaatcaaccgaatattggtgaatacgaat
gccgccgattgtacagttcagaaaatgaaagttaatatggcaatgctcccagaaacagtt
gaagctagcaaaattaataagcttttctggccggaagatggcgtaacaaaaggagattta
ttgacgtatttacgggaaatatcgccgtatatgctcccttttctaaaggatcgtattctc
acgttgattcggtgcccagacggtgttcagggagaatatttttttcaaaaacatcttccg
gactatgcaccatcatttattactagttatccaactaatgatgaagttttttttatctgt
aataagctggaaacattgctgtggtttggcaaccatggcgcactggaatttcatacaccg
tttcaaacagcaggcagcgcgaatccggctgaaattgtatttgatttggatccacctgac
agggaacggtttccactggctatacaagctgccaacatactaaaacaaatgcttgatgac
ttaaagttgatttctttcgtgaaaacatctggtaataaaggaatacaagttcacatcccg
ataccaaaggacagcctgacctatgatgaaacaggaattttcacagaggcaattgcaatg
actatggaaaatgcgtaccctgcattatttacaacagaacggttaaagaaaaatcgaaaa
gaaagaatgtatattgattatgtgcagcatgctatggacaaaacaatcattaatgcatat
tcgccaagaaaaacgaatcgtgccacagtttcaacacctttattttgggaagaagtgaag
gaagggttgaccccagaaatgtttaccattaataatgttgctgaacgggtaaaaaccctt
ggctgcccatttactggctataatgtaactggagagcgacagcaaatgacaaatattttg
aatctattaaggcaaaaaaaatag
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