Virgibacillus sp. MSP4-1: GWK91_03380
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Entry
GWK91_03380 CDS
T06398
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vim
Virgibacillus sp. MSP4-1
Pathway
vim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GWK91_03380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vim03400
]
GWK91_03380
Enzymes [BR:
vim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GWK91_03380
DNA repair and recombination proteins [BR:
vim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GWK91_03380
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QHS22045
UniProt:
A0A6B9YBA9
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Position
672211..674037
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AA seq
608 aa
AA seq
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MWKPMLPTLADDIPEGEEWVYEVKYDGFRAALEWTEEGARLVSRNGKDLTKHFPEIITFL
QSQWKDIEPFLPLYLDGEVVILKTPLQTDFGLLQQRGRTKKEEKIQEHARNHPARFLCFD
GLQIGTQKLPQLSYLQRKEKLRQLFSSLGWSLNVSFIQPVSLIPFYKDKHTLWRQLTLEY
GEGIVAKQKHQTYQPGKRVTHWLKIKNWRKVAGFITEYDPENDYFTASIYHENEIEVLGV
VKHGFSEEAFSTLTKLITEKGEKKGGIYHLPPAICVQINCLEAEDGQLREPNFDQFRFDL
SPEECTAAKKEQDLAMLPEKVEITNPDKPLWPKPGFSKLDHLMYLRNIAPYMLPFLEQKR
LTLIRYPHGVGDESFFQKHRPDYAPDFVGAYQEGGEEFIVCHTVETLLWIGNQGTLEFHI
PFQKTEESYPDEIVFDLDPPSRKEFYLAIKAAKLLKTICDQLDLYAFVKTSGKKGLQVHL
PLPEKALTYEETRAFTEAAAQLLVQKHPDDFTMERLKKNRGHRLYVDYVQHAEGKTIIAP
YSPRATEEGTVATPLYWEEVHEELDPAQFTIKTVKQRISNAGCPMIKYKEIRDQQNFTKL
KALIKGNH
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaccaatgctcccgacattagccgatgatattcccgagggagaggagtgggta
tacgaggtcaaatacgacggctttcgtgctgccttagaatggacagaggaaggagcacga
cttgtttcccgcaatggaaaggatttaacgaagcattttcctgagatcatcacgtttcta
cagagtcagtggaaagatatagaaccttttttgcctctctatttagatggagaagtggtt
atcctgaaaaccccgttgcaaaccgatttcggcttactccagcaacgggggaggacgaaa
aaggaagaaaagattcaggagcatgcccgaaaccatccggcccggtttttatgctttgat
ggtttgcaaatcggcactcaaaagctcccgcaactttcttatctccaacggaaggaaaag
cttcgtcagcttttttcctcgttggggtggtccttaaatgtctcttttatccaacctgtc
tcgctcatccctttctacaaggacaaacacaccttatggcgacagctaacccttgaatac
ggagaagggatcgtggccaagcaaaagcatcagacctatcagccgggaaaaagggtcaca
cactggttaaaaattaaaaactggcgaaaagttgccggctttattacggaatatgaccct
gaaaatgactattttaccgcctccatctatcatgaaaatgaaatagaagtcctgggggtt
gtgaagcacggtttttcagaggaagcctttagcacattaaccaaactgataacggaaaaa
ggggaaaagaaaggcgggatttaccaccttccaccggctatatgtgtccagatcaattgc
ttagaggcggaggatggacagctgcgggagcctaattttgatcagttccgtttcgatttg
tcgcctgaggagtgcacggctgcaaaaaaagagcaggatttagcgatgctgccggaaaag
gtggagattaccaacccggacaagcccttatggccaaaaccggggttttcgaagctggat
catcttatgtatttacggaacatcgcgccgtacatgctcccttttttggaacagaaaaga
ttgacactcatccgttatcctcatggggttggggatgaatccttttttcagaagcatcgg
cccgattatgcccctgactttgtgggtgcttatcaggaggggggagaggagtttatcgtt
tgtcacacggtcgagactctcctatggatcgggaatcaggggacgctggaatttcatata
ccttttcaaaagacagaggagtcctatccggatgaaatcgtgtttgaccttgacccgccc
tcaagaaaagaattttacttagcgataaaggcggcaaagctgttaaaaacgatttgtgac
cagcttgacctttatgcctttgttaagacgtcgggaaaaaaagggcttcaggtacatctg
cccttacctgaaaaagcactgacctatgaggagacgagagcgttcaccgaagcggccgcc
cagctccttgtccagaaacatcccgacgactttaccatggaacgtctgaaaaagaatcgc
ggccatcggctctatgtggattatgtgcagcatgcggagggcaaaacgattattgccccc
tattcccctcgggcaacagaggaaggaacggtagcaacccccttatactgggaagaggtc
catgaagaattggacccggcacagttcaccataaaaaccgtaaagcagagaatttcaaat
gcaggatgccccatgataaaatataaagaaattcgagatcagcagaattttacgaagctt
aaagcattaattaagggaaatcactag
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