Vulgatibacter incomptus: AKJ08_0648
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Entry
AKJ08_0648 CDS
T04035
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AKJ08_0648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_0648
Enzymes [BR:
vin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AKJ08_0648
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AKJ08_0648
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKU90261
UniProt:
A0A0K1PA21
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Position
785754..787610
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AA seq
618 aa
AA seq
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MRPPDPATESPPLELARSFLPPMRAVLADGGGQGWVELKYDGYRALAAIQGGQAALVSRN
GLDFTQRFPAIVRALEGLGAASTIIDGEICVLDPDGVPRFELLQRGDGEDVVFFAFDLLQ
QDSADLRGLPLEERWDRLARVIGEGSSALRLAERLDGPPEDALSEAERRGFEGIVIKRHG
SPYRARHPGAWRKRKAVAAQELAIVGFERTSTGGDAIGSLLLAVAMDDRFRYAGKVGTGF
TAADREALFRRLSESVVRRSPVVDPPRLRGAVWVRPELVAEVRFTEWTSEGRLRQPSFKG
LRVDKSPADCVREAAAPPEPSPGRAIPKARSDAGVRFTHPDRILFPRDGITKADVAAYYQ
AMAGPLLRALSGRPVALEHWNEGIDEPGWFHQKISDDDARSWMTLAAIPSQSGRRLERRL
LVDDRETLRWLAQRSVLTVHMWSSRTDSLNEPDWAIFDLDPAEGEDIRQAVDVAGALKAL
LDALGLPSLAKTSGKRGLHVLVPMAPGQRHDEAVRFALTVGRAVEQVLPQVTLERMKDRR
GGRLYIDCYQNGYGKTIAAPYSLRASDGAPVSAPLRWDEVNEGLEPGAFNLRTMPGRLDE
VGDLFGPILEKGIRLPSL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctcccgacccggccaccgagagccctcccctcgagctcgcccgtagcttcctc
ccgccgatgcgcgccgtcctcgccgacggaggcgggcagggctgggtcgagctcaagtac
gacggctaccgcgctctcgccgcaattcagggcgggcaagccgcgctcgtgagccgcaac
ggcctcgacttcacccagcggttccctgcgatcgtccgggccctcgagggtctcggcgcg
gcgagcaccatcatcgacggcgagatctgcgttctcgaccccgacggtgtgccccgcttc
gagctcctccagcggggcgacggcgaggacgtggtcttcttcgccttcgatctgctccag
caagacagcgccgacctgcgaggtctcccgctggaagagcgatgggaccgtctcgcccgc
gtgatcggtgaaggatcgtctgcgctgcgtctggcggagcgcctcgacgggcccccggag
gacgccctgagcgaagcggagcgccggggcttcgaagggatcgtgatcaagcggcatggc
tcgccgtaccgcgcccggcaccccggcgcgtggcggaagcgcaaggccgtcgccgcccag
gagctggcgatcgtcggcttcgagcgcacgtccaccggcggcgacgcgatcggctccctc
ctgctcgcggtcgccatggacgaccgcttccgctacgcgggcaaggttggcacgggcttc
acggccgccgaccgggaggcactcttccggcggctctcggagagcgtggtgcggcggtcg
ccggtggtcgatccgccccgtctgcgaggggcggtctgggtgcgcccggagctcgtggcc
gaggtccgcttcacggagtggacctcggagggccggctccggcagccatcgttcaagggc
ctgcgcgtcgacaagtcccccgccgactgcgtgcgcgaggcggcagcgccgccggagccg
tctcccgggcgagcgatcccaaaggcgcggtcggatgccggcgtgaggttcacccatccc
gaccggatcctctttccccgcgacgggatcaccaaggcggacgtcgccgcctactaccag
gcgatggccgggccgctcctccgcgccctgtcgggtcggcccgtggccctcgagcattgg
aacgaggggatcgacgagccgggctggttccaccagaagatctcggacgacgacgcgagg
agctggatgacgctggccgcgatcccttcgcaatccgggcgaaggttggagaggcgcctc
ctcgtcgacgaccgggagacgctgcgctggctcgcccagcggtcggttctcaccgtgcac
atgtggtcgtcgcgcaccgacagcctgaacgagcccgactgggcgatcttcgatctcgat
ccggcggagggcgaggacatccgccaggcggtggacgtcgccggggcgctgaaggccctc
ctcgacgccctcggcctccccagcctcgccaagacctccgggaagcgcggcctccacgtc
ctcgtgcccatggccccggggcagcgccacgacgaggcggtgcggtttgcgctcacggtg
gggcgggccgtcgagcaggtcctcccgcaggtgaccctcgagcggatgaaggatcggcgc
gggggccgcctctatatcgactgctaccagaacggctacggcaagacgatcgccgccccg
tactcgctccgggcgtcggacggcgcgccggtgtccgctccgctgcgctgggacgaggtg
aatgagggcctcgagccgggcgcgttcaacctgcggaccatgcccgggaggctcgacgag
gtgggcgatctcttcgggccgatcctggagaagggtattcgactccccagcctctga
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