Varroa jacobsoni: 111262751
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Entry
111262751 CDS
T07417
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vja
Varroa jacobsoni
Pathway
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111262751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111262751
03019 Messenger RNA biogenesis [BR:
vja03019
]
111262751
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111262751
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111262751
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111262751
NCBI-ProteinID:
XP_022692978
LinkDB
All DBs
Position
Unknown
AA seq
1475 aa
AA seq
DB search
MEDSVNDYASSLHDLTTNSKPLITMLTMLADDNRQYAESIVAVIEDYLKRSCAKIKLPTL
YLIDSIIKNVGEPYKKLFIENIIKIFLDVFQEGDEKTRSALYKLRQTWKGLLPDGKLYMI
DALTKGIDPNWPICPTLEHLANNIHLNPKFFGRQPPIIEIHETETSHKDKVTTVKEAVAS
AEQKMVDVSKQRHPRAAPDGQTISLDRESGENLRITELSANRSDQRRTDPRLKRRQQQPM
QLFEQQLLQPDVVMAEKAKNSDLFSGKESLSGTASSSGKGSDKKSSIKRTRSSEKEQQRV
NGKRQTSDSHSGSSKERTTSSKSNKDKTSSFSPEDRKSSRSAAGGGNCKKSSKSSSSSST
SSSSSSRVATKTVASQLQAPSNKSPTKSAGETPTGLRGGPSLADKEAAAILTGDVDLRIL
EPHAKKPKTETTVVPEPVAPLELFPKGDIDLRIRPTGGVSDPGQPLVSSSTATDRNVGEQ
QGSTHQGIIKNNVDEDEEEEFDKEAQWAKLKGRPVRNPTMATIQERGTRKDTTSEDRGNV
ATSSTNSHATVPAVSELVRAGATESGVAASGLRPPAHMPGSQGARIPMTVLPIVDVTPKQ
NAIPDLFPPGRSRAHIKISDPAPDSGQIRLDGRMREVRFVDGVAIAVMDEAPPNFVRARQ
IMFKGGSSKKILINEHHQIMAAFDGREHEFTLNNNRHRIRFGAPLRELYVDGIPYSCQFN
GVPVYIRSREDVFSVTLHPPCPSVNDKMEAPKELLAKLGLLPMPPDSLTLGPGGCVVGML
PPGGQVPIAPIGAPMGSAPAHLMGGPSTGGWVRYQDDRMSPAPHLGPPGPPGPHPPPGMY
PPPGMPHGMGPLPPPGSFGPGHPGPPGMFGPPPPSAMGGPMPGPPMGPGPYGPMGPPGMM
PYGQQPHPGMHGHPHMIGPAGGILRPPIGPPMGPPRPQERRMPAPPSVVAPVTAPVSLTP
VASVTPAVQPVNVSDLLSQLVNYGIIGGSSTTSTTESVQGSTDSSEKKPTGSILNPTIIK
EEIPKLSFKQTDQLKQRYGGVISALHDGLQCATCGQRFKQVDKNSDKYAQHLDWHFRMAR
KEREGLKKASSRKWFYDITDWVQFEEVEDIEDRARSYFELQEAQHDATSQDSQAPVVQEV
PSVPAKVIDHGDNTCVLCREPFANFFCEENEEWRLKNAILYEGQLFHPGCHEDYLKPARK
PSPEVKEEPEDDQSEVNKDVISESEKKMDIEEQRLEGIDDGSQPLPGLDFAPTSEELPSN
KVKTDTAEQTVSEEAVKSEPKGETEKSTENEEPMEEDLNDTVRAAEQSVVVEELGEFGVE
NLPPSVEHGYDLKDEEKSQDSSVGVEGLSEEAKKQQHESCEHQEQADTIAKQDSPQNQFD
ESADHSTTSKLKVFKGSGGFILKVKQETMTNGGDARGGVSQEKSSQDSGVGLEEHEDYGQ
NDDDEEWVPPQPDPAFKNLPMVKRGAEESGLCSIM
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggaagactccgtgaatgactacgcgtcgtctctgcatgacctcacaacgaactcgaag
ccactcatcacaatgttaacgatgttagccgatgataatcggcaatacgctgaaagcatc
gtcgccgtcatcgaagactaccttaaacggagttgtgccaaaatcaagcttccgacgttg
tacttaatagattctatcatcaaaaatgttggagaaccgtacaaaaagctgttcatagaa
aatatcatcaaaatttttctagacgtatttcaagagggtgacgagaaaactcgctctgca
ttgtacaagctccggcaaacgtggaaagggctgcttccagacggcaagctttatatgatt
gatgctcttacaaaggggatcgaccccaattggccaatttgtcctacattggagcatttg
gctaacaatattcacctaaacccgaaattcttcggaaggcagccgcctattattgagata
catgaaactgaaacgagtcacaaagacaaggttaccaccgtcaaggaggctgtcgcgtca
gcagagcagaagatggttgacgtgagtaaacaacgacatcctcgagcagcacctgacggt
caaactatttctttagatcgcgaatccggtgaaaaccttcgcataactgagctctcggcc
aatcgatcggatcaacgcaggaccgaccctcggctcaaacgaagacaacagcaaccgatg
cagctgttcgagcaacagttattacaacccgacgttgtaatggcagagaaggctaaaaac
tcagatctgtttagtggcaaggaaagtttaagtggtactgcaagtagtagcggaaaagga
agtgacaagaagtcgtcgataaagcgaacccgtagtagtgaaaaagaacagcaaagggtt
aatggcaaacggcagacgagcgatagtcatagtggcagtagtaaagagcggactacgtca
tcgaagtccaacaaagataaaacaagttctttttcaccagaagacagaaaatcgtcacgg
agcgctgcgggtggaggaaattgtaaaaagtcttcaaaatcatcttcctcctcatcaacg
tcatcttcctcttcatcacgtgttgccacaaagactgtcgcaagtcagttgcaagcccca
agcaataaatcgccaactaagtctgccggagagacccctaccggtctccgtggaggacca
tcactcgccgacaaagaagcagctgctattctaactggagatgtcgatcttagaatattg
gagcctcatgctaagaagccgaaaacggaaactactgtagtacccgagcctgtcgctccc
ttagaattattccccaaaggagacattgatctgcggatccgacccacaggaggtgtaagc
gatcctggacaacccctagtttcatcatcgacagccaccgaccgaaatgtcggtgagcaa
cagggctcaactcatcaaggcattatcaaaaacaatgttgacgaagacgaagaagaagag
tttgataaagaagcgcagtgggccaaactaaagggacgacctgttagaaatcccacaatg
gccacaatccaagagcgtggtacaaggaaggataccactagcgaagatagggggaacgtt
gccacttcttctacaaactctcatgcaactgttccagctgttagtgagcttgttcgggca
ggagcaactgagtcaggggtggcagcctcaggtttacgacctccagcccatatgcctggc
tcgcaaggagctcgtataccgatgactgtactacccatcgtggacgtcaccccaaaacag
aacgctattccagacctcttcccacctggacgcagtcgagctcacataaagatttctgac
ccagctccggacagtggacagattcgtttggacggtcgtatgcgggaggtccgctttgtt
gacggagtagccatagctgttatggacgaagctccacctaatttcgttcgcgctcgtcag
attatgtttaagggcggcagtagtaaaaagatcctcatcaatgaacatcatcaaataatg
gctgcctttgatggtagagaacatgagtttaccttgaataataatcgccacaggattcgt
tttggtgcaccacttcgcgaactctatgttgacggcattccgtattcatgtcagttcaac
ggagttccggtatacattcgtagccgtgaagatgtgttttccgtgacgctgcatccacca
tgtccgagtgtcaacgacaagatggaagcccctaaggaactgcttgccaaacttggattg
ttgcctatgcctccggatagtttaacgttaggtccgggtgggtgtgtcgtcggcatgctt
cctcctggtggccaagtacctatagcgccgatcggtgcccccatggggagtgcaccggcc
catctgatgggaggaccaagcactgggggatgggttcgataccaagatgatcgcatgagc
cccgcacctcatttaggacctcccggaccgccaggccctcatccaccgcctggaatgtat
ccacctcccggaatgccccatggaatggggccactacctcctcctgggagtttcggaccg
ggtcatcccggccctccgggaatgttcggtcccccgcctccatcggctatgggtggtcca
atgcctggaccaccaatgggtccgggaccatacggacctatgggccccccaggaatgatg
ccctacggacaacaaccgcatccgggtatgcatggccatccccatatgattgggcctgct
ggaggaatactccgtcctccaataggccctcccatgggaccccctcggccgcaggaacgc
cgaatgccagcaccaccaagtgtagtggctccagtaactgcccctgtcagcctaactcct
gttgcatccgttactcctgctgtgcaaccggtgaatgtgtcagatctgcttagccagttg
gttaattacggtattattggtggttcttcaacaacatcaactactgaaagcgttcaaggt
tcaacagattcttcagagaaaaagcccactggcagcattcttaaccctacaatcataaag
gaagagatccccaaacttagctttaaacaaactgaccaactcaagcaacgctatggaggc
gtgatttcagctctacatgatggccttcagtgtgctacatgcgggcagcgctttaagcag
gttgacaagaactctgataaatatgctcaacatcttgactggcactttaggatggctcga
aaggagcgagaaggattgaagaaggcctcatcaagaaagtggttctacgatattacggac
tgggttcaatttgaggaggttgaagatatagaagatcgcgcgagaagctactttgaacta
caggaagcacaacatgatgcaacgagccaggacagccaggcacctgtcgtacaagaagtt
ccgtcagttccagctaaagttatcgatcatggtgacaatacgtgtgtgctatgtcgggaa
cccttcgcaaatttcttctgtgaagaaaacgaagaatggcgtttgaagaacgcaattctc
tacgagggtcagctcttccatccaggatgccacgaagactatttaaagcctgcacgaaaa
cctagtccggaggtcaaagaagagccggaggatgaccaaagcgaagtgaacaaggacgtc
atcagtgaaagcgagaaaaaaatggacattgaggagcaacggctagaaggaattgacgac
ggaagtcaacctttgccaggactcgactttgcgccaacatcggaagaattgccttcaaat
aaagtcaaaacagatacggctgagcagactgtaagtgaggaagcggtaaaatctgaaccc
aaaggtgaaacagaaaaatctacagagaatgaggagcccatggaagaggatttgaatgat
acagtacgggcagccgagcagtccgtagtagttgaggagctaggggagtttggcgtagag
aaccttcctccatccgttgaacatggctatgacctcaaggacgaagaaaagagtcaggat
tcctctgttggtgttgaaggcctttctgaggaggcaaaaaaacagcaacatgagtcgtgt
gagcatcaggaacaggcagacactattgcgaaacaggacagccctcaaaatcagtttgat
gagtcagcagatcattctacaactagtaagctgaaggtgttcaaaggttccggagggttt
atcctcaaggtcaaacaggagacaatgacaaatggtggtgacgcaaggggtggggtttcg
caggagaagagctcacaagacagtggcgttggtcttgaagaacatgaagactacggacag
aacgacgatgatgaggaatgggtcccacctcaacctgacccagctttcaagaatttgcca
atggttaagcgtggggccgaggagagtggcctgtgtagtataatgtaa
DBGET
integrated database retrieval system
