Varroa jacobsoni: 111267274
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Entry
111267274 CDS
T07417
Name
(RefSeq) syndecan-like isoform X1
KO
K16336
syndecan 2
Organism
vja
Varroa jacobsoni
Pathway
vja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111267274
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
vja04090
]
111267274
00535 Proteoglycans [BR:
vja00535
]
111267274
CD molecules [BR:
vja04090
]
Proteins
111267274
Proteoglycans [BR:
vja00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
111267274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
111267274
NCBI-ProteinID:
XP_022701149
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MDSRQSQQVIGGSHHVSKRDATAGTGFGVRKSSSRSGAGAGNSSKRKELTIAESLMGSGD
SEDSEEQESTEHGRHSKISVPSQPHSSDDENDEDIEGSGDMFKPHSKPKATGTTKRPGRV
NGPPPLREDTDSSHTGQLGGGGHSTSTEIPTSTSTLSSTTTWSSTSSSVPISSTRRPLIA
PASTTSMPEDDEDSEDEGDYEGSGTSELSAGKATGHISAGGGVFSSKDRNRKKQEESTDD
SSSKSIAEDPEEYYDEDENEDSDLDETEILSLPKGSSSPTSGPSSTSSSTILSTIAPATT
TTTTTAAPSTTSFAIPSTTIPSSTTASSGSVFGSAGNADLENDTDDEDDGEDDDEDDGDD
DGSDTEGAGGVLHGRTGAAAEGGESTALDEDKYQRGNKPGPSGHLPDGNGVASSDNSHGY
DTARRKETDDGKSGSSGPSRGGGGQKWDAKGDESRENSQENDITHDSDDDNKISSGEVLL
RHKATQRPSTLLGQPGILVAVMGGAVVGLLLAILCVMFVVYRMRKKDEGSYPLGKRNHDD
HFSTHRRNYMRPSANKEFYA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggattcccgccagtcacaacaggttatcggtggcagtcaccatgtcagtaaacgcgat
gcaacggcgggtactggcttcggagttcgaaagtcctcatccagaagcggcgctggtgcc
ggtaacagcagtaaacggaaggagctaacaattgctgagtcgctaatgggctctggcgat
tcggaggatagtgaagaacaggagagtactgagcacggtcgccattcgaagatctcagta
ccgtcgcaacctcactcgagcgacgatgaaaatgacgaggacatcgaaggttcgggggac
atgttcaagccgcacagcaaacccaaggccacaggcacaacaaaacgaccaggccgcgtc
aacgggcccccgcctctgcgcgaagacacggactcaagtcatacgggacagcttggcggc
ggtggtcacagcacatcaacggaaatcccaaccagcacctctactttgtcgtcaacgacg
acatggtcaagcacctcgtcaagcgttccaatatcatcgacgcggcggcctctgattgct
ccggcgagcactacgtcgatgccggaagacgacgaagattctgaggacgaaggtgactat
gagggatctggcacgagcgaactgtctgctggaaaggccacgggacatatttccgctgga
ggtggcgtgttctctagcaaagatagaaaccgcaagaaacaggaggagtcaacggatgac
agctcctcgaagtccattgctgaagaccctgaggaatactacgacgaagatgaaaatgaa
gacagcgacctcgatgaaacagaaatcctgagccttccaaagggcagttcatcaccgaca
tctggcccatcaagcacttcatcgagtaccattttatcaactatcgctccagccacaaca
acaacgaccacgacagcagctccttcaacaacgtcatttgcgattccatctacaaccatc
ccgtcctcgactaccgcaagctctggatcagtgttcgggagcgcgggcaatgctgatctg
gaaaatgacaccgacgacgaagatgacggcgaagacgatgacgaagacgacggggatgat
gacggatccgataccgagggcgctggtggcgtccttcacggaagaacgggcgcagccgct
gaaggtggcgagtcgaccgccctcgacgaggataagtaccagaggggcaataaacctggg
ccatccggtcatttgcccgacggtaacggcgtcgcgagcagtgacaatagtcatggctat
gatactgcccgaagaaaggaaacagatgacggaaaaagcggcagcagcgggccatcgcga
ggtggcggaggacaaaaatgggatgcaaaaggcgatgaaagccgggaaaacagccaggag
aacgatatcacacatgacagtgatgatgataataaaatttctagcggtgaagtgcttttg
cggcataaggcgacacaacggccgtccaccctgctaggtcaacccggtatactggtggcc
gttatggggggcgccgtagtcggcctcctgctcgcgatcctgtgtgtgatgttcgttgtg
taccgaatgcgcaagaaggatgaaggatcatatccactcggaaagcgcaaccatgatgat
cacttcagcactcatcggaggaactacatgaggccctcagccaataaggagttctacgcc
tga
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