Varroa jacobsoni: 111271441
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Entry
111271441 CDS
T07417
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
vja
Varroa jacobsoni
Pathway
vja03022
Basal transcription factors
vja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111271441
09124 Replication and repair
03420 Nucleotide excision repair
111271441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111271441
03400 DNA repair and recombination proteins [BR:
vja03400
]
111271441
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111271441
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111271441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
111271441
NCBI-ProteinID:
XP_022707964
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSSNIQYRDLISYLQTLESAILNQLYRHPATCLAVFRKLPPLARHYVIRLLYIRQAVPQA
VVSSWYVQDAVKENIAAQDALKSLHLLNEVNLPGGLPGWMLNINFQEKLKEALAGGGDPW
LVYGELDKDKHGRDAKFLDQYAKERWDCVLHYMVGSEVPAESGISHDAIRILLHSGLMRQ
DETNANKSLITMEGFQFLLMDTEDQVWYFILQYLSTVEGRGISLVECLQFIFQLSFLTLG
KDYSIKGMSQPLLVFLQHLREFGLVYQRKRRSGRFYPTRLAIGLASGLKELDANKELTGS
KDEEQDQGYIIVETNYRVYAYTDSPLQVALISLFCDLSYRFPNLVVATLSRESVRQALKG
GITSAQITHFLKTRSHRVVADREEGIIPMTVSDQLHLWEKERDRFKMTESVLYSQFQTHA
DFEMLRNYANDMHVLLFENPQRRLMVVSKSGDNDVRHYWKRHKKEYD
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaatatccagtatcgtgatttgatctcatatcttcaaacattggagtcggcc
atcctcaaccaattatacagacatcccgctacatgtctcgcggtcttccggaaattgcct
ccattagctcgccattacgtgattcgtctattgtacattcggcaggctgtgccacaggcc
gtagttagctcatggtatgtgcaggatgcagttaaggaaaatattgccgctcaagatgcc
cttaaaagcctgcaccttttaaacgaagttaatttaccaggtggcttgcccggttggatg
ttgaacatcaacttccaagaaaagctgaaagaagctttagctggcggtggggatccctgg
ttagtgtacggagagttggacaaagataaacatggacgcgatgcgaagttcttagatcag
tatgccaaagaacggtgggattgcgtacttcactacatggttggatccgaggtaccagcg
gagagcggaatctctcacgacgcaatccggattcttcttcactcaggacttatgcggcag
gatgaaacaaatgcaaacaagagcctaatcacaatggaaggctttcagtttttattgatg
gatactgaagatcaggtgtggtactttatcctgcaatatctgtcgaccgtcgagggacgt
ggcatctcccttgtggagtgtctgcagtttatttttcaactgagtttcctcacacttggt
aaagattatagtattaaaggaatgagccaacccctactcgtgtttttgcaacatctgcgc
gagttcggcctggtttatcagcgtaaacgtcgttcaggacggttctacccaacacgacta
gcaattggtttggcgtcaggcttaaaggaactggacgcaaacaaggaactcaccggatcg
aaggatgaagaacaggaccagggctatatcatcgtcgaaaccaactatcgagtgtacgcg
tataccgattcaccactgcaggttgcgttaatttcactgttttgcgacctctcgtaccgc
ttccctaacctagtagttgccacgttaagccgggaaagcgttcgacaggcgctcaaaggc
ggaattacgtccgcccagatcacgcacttcctcaagacgcgaagtcatcgcgttgtcgct
gaccgtgaagaaggcatcataccgatgacggtgtcagatcagctacatttatgggagaaa
gagcgagatcgtttcaagatgacagaaagcgttctctattcacagttccagacacacgcc
gattttgagatgcttcgtaactatgcaaacgatatgcatgtattactgtttgagaacccg
caacgaaggctaatggtcgtaagcaaatcgggcgataacgacgttcgacattactggaag
cgtcataaaaaggaatacgattga
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