Vibrio japonicus: NP165_05155
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Entry
NP165_05155 CDS
T08510
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NP165_05155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_05155 (mfd)
Enzymes [BR:
vjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP165_05155 (mfd)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NP165_05155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
SecA_DEAD
DUF3583
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UUM31521
LinkDB
All DBs
Position
1:complement(1061300..1064761)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSDTHLFHLANPTKAGDKKQVGNLQGASLAVAVAELAEQHSNHTLLAVPDPQTALKLLQE
VEQFTTQDVALFPDWETLPYDNFSPHQEIISDRIAKLYQLPTQTSGITIVPVSTLLQRQS
PRDFLLQHTLMVKVGDRFSLDKLRIQLETSGYRHTDQVFGPGEYASRGSILDLFPMGSSE
PFRIDFFDDEIDTIRTFDPENQRSINDVKEIRLLPAHEFPTTESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFDKTETLFDYISEGSQLITVGNIEASIDTFLDDV
DYRYDQRKVDPLRPLLPPEELWLRKDELFSHFKTLPQVQLSIEPVIEKAGRSNPDVKPLP
ELSVQHQNKEPMAALRQFSESYKGKVVFSVESEGRREALLELLQPIKLRPNSHDSFAKAI
TSKDKFSLILGAAEHGFLFGDEQVALICESDLLGDRVIQRRRKDRKTTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYLGLQTLEAGGMITEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
DSAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKREIKPGYKFALDRGQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIDDGKVDIIVGTHKLLSND
IKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQSDDAVVREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRYNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEVRLPALLPDDYI
PDINTRLSMYKQIASVSDKQELDDLKVELIDRFGLLPDATQNLLSVSGLKLQAATLKARK
IEAHDKGGFIEFSPDAEINPMYLVKLLQSQPQKFAMDGPTKFKFTVPLVDRRKRIQFIGD
MLEEFQQNLLPKA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacacatcttttccatctggcgaatccaacaaaagccggagataaaaaacaa
gtcggtaacctacaaggcgcgagcttagcagttgctgtagcggaacttgctgagcaacac
agtaaccatacactgctcgcggtgccagaccctcaaactgcgctgaagctactccaagaa
gttgagcagtttaccactcaggatgttgcacttttccccgattgggaaactctgccttac
gataacttttctccccatcaagagatcatttctgaccgtatagcaaaactttaccagcta
cccactcaaacaagtggcattaccattgtgcccgtcagcacgttactgcaacgccagtca
ccgcgtgactttttgttgcaacacactttgatggtgaaagtcggcgatcgcttctcttta
gacaagctcagaatccagctggaaacctctggctaccgacataccgatcaagtgtttggg
ccgggtgaatatgccagccgtggttcgattttagacctcttcccaatgggttcgagtgaa
ccgtttcgtatcgattttttcgatgatgaaatcgatacgattcgcacgttcgatccggaa
aatcagcgttcaataaacgacgtcaaagagattagactgcttccggcacacgagtttccg
acgacagaatctgctatcgaagattttcgtattcgctggcgtcaacgcttcgaagcaaga
cgcgagccagaatccgtctacatgcaagtttctaaaggcacttggccggcgggtatcgaa
tattggcagcctctattctttgataagacagaaacattatttgactacatttctgaaggc
agtcagttaattacggttggcaatattgaagcgtccattgacaccttcctagacgatgtc
gactatcgatatgatcaacgtaaagtcgatccacttcgaccactgctgccacctgaagaa
ttgtggcttcgcaaagatgaactgtttagtcacttcaagacgttaccgcaagtacagtta
tcgatagaacctgttattgaaaaagccggacgcagcaatcctgatgtaaaacccttgccc
gagctttctgttcaacaccagaataaagaaccaatggcggcactgcgccagtttagtgaa
tcctataaaggaaaagtcgttttttccgttgagtcagaaggtcgacgcgaagcgcttttg
gagcttttacagccaattaaactcagaccgaactcccacgacagttttgccaaagcaatc
acaagtaaagacaaattcagtctgatcttaggggcagcagaacacggttttctttttggt
gacgagcaagtcgcactcatttgtgaaagcgacttattaggcgatcgcgtgattcagcgc
cgccggaaagatcgtaaaacaaccaacagcgacgccgtaattcgaaaccttgcagagcta
aagcctggccagcccgttgtacatatcgaccacggcattggacgctacttaggcttacaa
acccttgaagctggcggcatgatcacagagtacgtgacgcttgagtaccaaaacgaagca
aaactatacgtacctgtagcatcactcaatttaatcagtcgttactcaggtggcgctgaa
gacagtgctcccctacacaagcttggtggcgaagcgtgggcgaaagccagacgaaaagcc
gcagagaaagtgcgagatgtggcagcagagttattggatgtttatgccaagcgcgaaatc
aaaccgggttataaatttgccctagacagggggcaatacgccacattcaaagcaggtttc
ccatttgaagaaaccgatgaccaatcgatggcgattaacgcggtgatgtctgatatgtgt
caggctaaagcaatggatcgtttggtttgtggtgacgttggctttggtaaaacggaagtt
gcgatgcgggccgctttcctagccacagacaacggtaaacaggtcgctgtcctcgtaccg
acgaccttacttgcccagcaacatttcgagaattttagagaccgctttgctaacttgcct
attcgagtcgaagtgctgtctcgttttaaaaccgccaaagagcaaaagcaagtgctgcaa
gacattgatgacggcaaagtcgatatcattgttggcacgcacaaactcctttcaaacgac
atcaagtttaaagacttagggctactcatcgttgatgaggaacaccggtttggagtgcgt
cagaaagaaaaaatgaaagcgatgcgtgctgatgttgatattctaacgctcaccgcgaca
ccaatccctcgtacactgaatatggcaatgagtggcatgcgcgacctgtctatcatcgca
acgcctccagccagacgattagcgattaaaacctttgttcgtcagagtgatgacgctgtc
gtgcgtgaagcagttctacgtgaaatcatgcgtggcggccaagtctacttcctccacaat
caggttgagaccatagacaaagttgcagcggatctagaaaaactgatccctgaagcccgg
gttacggtcgctcatggccaaatgcgagagcgcgaacttgagcgaatcatgaatgatttt
taccaccagcgttataacctgcttgtgtgtacgacgatcatcgaaaccggtatcgacgta
ccgacggccaataccattatcatggatcgtgcagataaccttggcctggctcaattacac
cagcttcgtggtcgtgttggtcggtcacaccatcaagcgtatgcttacctacttacacct
catcctaaagcgatgacgaaagacgcgattaagcgtttagatgccattgcatcgctggaa
gacttaggtgctggtttcacgctcgcaacgcacgatttagaaattcgaggcgctggtgag
ttactcggtgatgagcaaagtggtcagattcagtctgttggttttacgctctatatggaa
atgttagagcaagctgtcgaagcacttaaagaagggaaagaaccctctttagatgagttg
ttaagagagcaaaccgaagttgaggtgcgtctacctgctttgctaccggatgattatata
cccgacatcaatactcgtctttcaatgtacaaacagattgccagcgtaagcgacaagcaa
gagctagacgatctaaaagttgaactgattgatcgttttggtttattgccggacgcaaca
caaaatctactttctgtttccggattgaaactgcaagccgcgacactcaaagcaagaaaa
attgaagcgcatgataaaggcggatttatagagttctccccagatgcggagataaaccct
atgtatttggtgaaactattgcagtctcaaccacaaaagtttgcaatggatggaccaacc
aaatttaagtttacggtaccattggtcgatagacgtaaaagaattcaatttattggtgac
atgttggaagagttccaacaaaaccttttacctaaagcctga
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