Varanus komodoensis (Komodo dragon): 123024331
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Entry
123024331 CDS
T07701
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123024331 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vko03400
]
123024331 (LIG4)
Enzymes [BR:
vko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123024331 (LIG4)
DNA repair and recombination proteins [BR:
vko03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
123024331 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID:
123024331
NCBI-ProteinID:
XP_044287857
Ensembl:
ENSVKKG00000002733
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MKMSSIPALHSSSPLTVASQVPFADLCLTLERIQTCKSRPDKTKYFKDFLDSWRKFHDAL
HKNEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLHYR
MPVGGDAGDFAMIAYFVLKSRCVKQGQLTIQQVNQLLDAISNNNAAKRKDLIKKSLLQLI
TQCSALEQKWLIRMILKDLKLGISQQTLFSIFHADAAELHSVTTDLEKVCRELHNPSVFL
SDVSISLFSPFKPMLAAIANIQQIEKQMNKQSFYIETKLDGERMQLHKDGDVYKYFSRNG
YDYTPQFGASPLEGSLTPFAHKAFKNNIQNCIVDGEMMAYSPITQTFMQKGNKFDIKRMV
DDSELQTCFCVFDVLMVNDQKLGHEILSKRYEILNKILMPIAGQIQIVPKRQASTQKEVV
DALNEAIDNREEGIVVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETPLPGKKPSVFHSICRVGSGYTMKELYNLSLKLAKYWKPYCKRDPP
YNILCGIEKPEVYIEPCNSVIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDLLEQLRGKASGKLASKHFEMVDDEPQEKKRKTMQKVKKKIGLIDHFKAPDLSKVNKIS
SIFEDIEFCVMTGTGRYSKYELESKIAEYGGSIIQNPGLDTYCVVAGVENVRVKNIISSN
KYDVVKAEWLLQCFQTKSFVPWRPAYMIHMSSETKQHFACKYDFYGDSYTVDTDMAQLKE
VFSGINNFEEELSWDVLTDLETHYSWESSPFSMFRQHIIYLDLYDKVSNSDAKFSQTRLL
TGALMLRFHGAKVVSQLEEGVSHVIIGNHDNLKKIKTTRKMFKRKFKILSYQWIRDSIDA
GKLQDEKFYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtcatccatccctgctttacattcttcttcccccctaaccgtggcatcacaa
gttccttttgcagatctctgcttaacattagaacgaatacagacatgcaaatcccgacca
gacaaaacaaagtatttcaaggattttttagattcttggaggaaatttcatgatgctctt
cataaaaatgagaaggatgtgacagattccttttatccggcaatgaggcttattcttcca
cagttggaaagagagagaatggcttatggaattaaagaaactatgcttgcaaagctctat
attgagctgctaaatttaccaaaagatgggaaagatgctttaaaattgttacattatcgg
atgcctgttggaggagatgctggagactttgctatgattgcctattttgtgttgaaatca
agatgtgtcaagcaaggtcaactgactatacaacaagtaaatcaacttttagatgctatt
tcaaataataatgccgctaaaaggaaggatctgatcaagaagagtcttcttcagttaata
actcagtgctcagcacttgaacaaaaatggttgatcaggatgatcctaaaggatctgaaa
cttggtattagtcagcagactttattttctattttccatgctgatgctgcagagttacac
agtgttacaactgatttggagaaggtttgcagagagttgcacaatccctctgtgtttctt
agtgatgtttctatttcattattctcaccttttaaaccaatgctagctgctattgccaat
atacaacaaatagaaaaacaaatgaacaaacagagtttctacatagaaactaaattagat
ggtgaacgaatgcagcttcacaaagatggagatgtttacaagtatttttcccgaaatggt
tatgattataccccgcaatttggagcttctcctcttgaaggttcattgactccatttgct
cataaggcctttaaaaacaatattcaaaactgcattgtggatggtgaaatgatggcctac
agtcccatcacacagaccttcatgcagaagggaaacaaatttgacattaaaaggatggta
gatgattctgaattgcagacatgcttctgtgtgtttgatgttctaatggttaatgaccaa
aagctgggtcatgagatactgagcaaaagatatgaaatactaaataagattcttatgcca
atagcaggtcaaatacaaattgttcctaaaaggcaggctagcacacagaaagaagtggta
gatgctctaaatgaagcaattgataatagggaggaagggattgtggtaaaagaccctatg
tcaatttacaaaccagacaaacgtggagaagggtggctaaagatcaaacctgagtatgtc
aatggactgatggatgagctggatcttttaattgtagggggctactggggaaaaggtctt
cgtggtggaatgatgtcacattttttatgtgcagttgctgagactcctctacctggtaaa
aagccatctgtattccattccatttgtcgtgttggctctggttacacaatgaaagagctg
tacaatctcagcttgaaattagccaaatattggaaaccatattgtaaacgggatcctcct
tacaatatcttgtgtgggattgagaaacctgaagtctatatcgaaccttgcaattcagtc
attgttcagattaaagctgctgagattgttagtagtgatatgtataaaactgattgcacg
ttacgtttccctcgcatcgagaagataagagaagataaagaatggcacgaatgtatgact
cttgaccttctggaacaactcagaggtaaagcttctgggaagctagcaagtaagcacttt
gaaatggttgatgatgaaccacaagaaaaaaaacgtaaaactatgcaaaaggttaaaaaa
aagataggcttaattgatcatttcaaagcccctgatctttctaaagtgaacaaaatttct
agtatatttgaagatattgaattttgtgttatgactgggacaggaagatattcaaaatat
gagttagaaagtaaaatagcagaatatggtggcagcataatacaaaatcctgggctggat
acctactgtgttgttgcaggggttgagaatgttagagtaaaaaatattatttcatccaac
aagtatgatgttgtaaaagcagagtggcttttgcagtgctttcagactaaaagctttgtg
ccatggcgacctgcttatatgattcacatgtcttcagaaacaaaacaacactttgcctgc
aagtatgatttttatggtgatagttacacagttgatactgatatggcccaattaaaggaa
gtgttctcaggaattaataactttgaggaagagctctcctgggatgtgctgactgaccta
gaaacacattattcatgggaaagctctccattcagtatgttcaggcagcacatcatttac
ctggacctttatgataaagtgagcaattctgatgccaagttcagtcaaacaagattgtta
actggagcactgatgcttcgttttcatggagcgaaagtagtctcacaacttgaagagggt
gtgtcccatgtaatcattggcaatcatgataatttgaagaaaataaagacgaccagaaaa
atgtttaaaagaaagtttaaaattctgtcatatcagtggataagggattctatagatgct
gggaaattacaagatgaaaaattttatttactttaa
DBGET
integrated database retrieval system
