Varanus komodoensis (Komodo dragon): 123029078
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Entry
123029078 CDS
T07701
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123029078 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vko03021
]
123029078 (PCF11)
03019 Messenger RNA biogenesis [BR:
vko03019
]
123029078 (PCF11)
Transcription machinery [BR:
vko03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123029078 (PCF11)
Messenger RNA biogenesis [BR:
vko03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123029078 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
123029078
NCBI-ProteinID:
XP_044297541
Ensembl:
ENSVKKG00000002250
LinkDB
All DBs
Position
Unknown
AA seq
1743 aa
AA seq
DB search
MSGGGSGGGSTAASEGSSSSSSSSSSASGGGGSEDACRDYQSSLEDLTFNSKPHINMLTI
LAEENVPFAKDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLDAFTKNLVATFVN
VFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPNVNTSSIHVN
PKFLNKSPEEPPAPSTTVCSPVSCAAVPSAPVVPEMQKNLTQEQIIRQQLLAKQKQLLEL
QQKKLELELEQTKAQLAVSLSVQQSGSSLGQASLKPHVPPPPHMPLKASHQVCLPPEKKR
LSPLHDVKAGNRDPRLNRSSQHSHSKDQSHRKDFVVNPASQPDPKPSKNLQAEKQNVSKQ
EKQKQSEKLQKKEFDHFDAKSKSKSPSPLQTKLLHAKDTRNQECENTRVTEISKRDPRLK
KHLLEKPEGKDEDIKEKRRSVERKDKEEHRSVGGRNKIINGVVQKQDTNTEESEKPGGKP
GRSSTRKRSRSPRSRSPSSHSPKRRERRSPKRRLRSLSPSGPKTGKPRQSGPKQSHIEDF
GPGIRDERSSNKRSLKQEVRDSRRLKKTHEDRTQDGMNQHPSKASLEPKENVENWQGSKS
SKRWKSGWEENKNPQLNEEHQGPCKSPHQRHRDTWATSKGVPSPRTPKQQHRLSVDANLQ
IPKELTLANKGELLKKASDRLASGEITQDDFLVLVHQIRQLFQYQEGKHRCNVWDSPTGE
KGISKKKPLLSESELIYHEHKATLRRTQVQRSFPRHNLMDAEEILDYHLNDAFLSGKDCE
QTKKCAGQFGERSKRHSPVGGSRPYSDNSAHDGRRRHEEPNSSKGIREEQRSPFSDHYKR
SRYEDTEKQFTDGPGSRFGVTDGKQRFSSLMEERSHFEGSPRHPGARAGGDGQTTHFEGP
ANTNSRIEGPQAQSNLRFEGSLGQPTSQFDGPPGQSGGKGSLLFDGPPAQMGGGSLRFEG
PSGQVGAGTAIRFEGPMGQPGGALRFDGPAGQSMAIMRFEGTHGQPSGGMRFEGPHGHPS
SGIRFDGPHGKPSAGMRFEGPHDQPSGNLRFDGQPSGAMRFEGPHGQPSSGIRLEGPLDR
SVGPHGPPGGGMRFEGPHGQPMGPHGQPGSGLRFEGPHLQPMGPLGQPGGNLRFEAPHGQ
PMGAHGQPASGLRFEGPHGQPMGSHGQPGVGPRFDGPHSQPVGPLGQPGIGPRFEGPSVQ
SGGGMRFEGSINQAGPRFDGSQSRFDGQPSHLQRLDGLHVQPGPRCEMGPAQQTPPRFEG
PPGQVQPRFDTSMPQRFDDPQHQQTARFDIPLGPRIENVANHPASRLETPPYGQTGPYNE
PPNQPPYNGPSQGMQFQRPEQIFDNPQGPSFNGPPVSGAQAFANTLNRAPGPPFYDDKNL
QGPQYGNFSSMTLGNVQPPQQGPVMSIASGQPVSYIQGQPLLPVHARNPGSFVQSQPGNV
PLSYPDNHLGQLDVNELYSKLLSTGILKVLQPDSTPAQVNEVSTQPTPEEEEEDQDQNED
QDVPDLTNFVIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQKTSSFDSTP
SPSKTPAENPLNIMLSIVKQEVQDSCNSPKIKEEPEEKPEECMEGGLPASVEIKTEPEKV
ESA
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcagcggcggcggcagcacggcggcctcggaggggtcttcctcctct
tcctcctcctcctcctccgccagcggcggcggcggcagcgaggacgcgtgccgcgactac
cagtcatcgctggaggacctgacgttcaacagcaagccccacatcaacatgctgaccatc
ctggccgaggagaacgtgcccttcgccaaggacatcgtctcgctgatcgaggcgcaaatc
gccaaggctccttctaatgagaaacttcctgttatgtaccttatggactccattgtcaag
aacgttggaagagaatatcttgatgcatttactaaaaacctagttgcaacatttgttaat
gtttttgaaaaggtggatgaaaatactaggaaaagtttatttaagttgcgttccacatgg
gatgaaattttccctttgaagaaactgtatgctctcgatgtccgggtgaattcagtagac
cctgcttggccaattaagccgctaccccctaatgtgaatacttctagcatccatgtgaat
cctaagtttttaaataaatcgcccgaagaacctcctgcacctagcactacggtgtgttct
cctgtatcctgcgctgctgtgccctctgctccagttgttcctgaaatgcaaaagaatttg
actcaagaacaaataatacgacaacagctactggcaaaacaaaagcagttattagaactt
caacagaaaaaattagaactggaactagagcagactaaagcacaactggcagtttccctt
agtgttcaacaaagtggatccagcttggggcaagcatctttgaaaccgcacgttccacca
ccacctcacatgcctcttaaagcttcccatcaggtttgtctgccacctgagaaaaaacgt
ctgtcgccactccacgatgtcaaagcaggaaacagggaccctcgtcttaatagatcaagt
cagcattctcattctaaagatcaaagtcacaggaaagactttgtagtgaatccagccagt
cagcctgatccaaagcctagcaaaaacctgcaggctgagaaacaaaatgtgtcaaagcag
gaaaaacaaaaacaaagcgaaaagttgcagaagaaagagtttgatcattttgatgcaaag
tcaaaatcaaaatcaccatctcccttgcaaaccaagctgctccatgctaaagatactaga
aatcaagaatgtgagaataccagggttactgaaatcagtaagagagatcccagattaaaa
aagcatcttctagagaagccagagggcaaagatgaagatataaaagaaaagagaagaagc
gtggagagaaaagacaaagaagagcatagatcagttggagggagaaataaaataattaat
ggcgttgtgcaaaagcaagataccaatactgaagagtcagagaaaccaggtggaaaacca
ggaaggtcaagcactaggaaaaggtcacgctctcctagatctcgatccccatcttcccat
tctccaaagcgaagagaaaggaggtcacccaaaagaaggctcagaagtctctctccttct
ggacctaaaactgggaagcctcgacagtctgggccaaagcaatcccacatagaggatttt
gggccaggaatacgggatgaaagaagctctaataagcgaagtcttaaacaggaagtgaga
gattctagaaggctgaagaaaactcatgaagaccgaacacaggatggaatgaatcagcat
ccttcaaaagcaagtttggaaccaaaggaaaatgtggagaactggcaaggttccaaatca
agcaaaagatggaagtctggttgggaagaaaataaaaatccccaacttaatgaagaacat
caaggaccttgtaaatcacctcatcagaggcacagagacacatgggcgactagtaaagga
gtgccatcgcctcgcacaccaaagcaacaacatcgattaagtgtggatgctaatttgcag
attcccaaagaattgaccttggcaaacaagggagagctgctcaagaaggcaagtgatcgc
ttggcatctggagaaataacacaagatgattttcttgttctggttcatcagattcgacag
ctattccagtatcaggaaggaaagcacaggtgcaatgtgtgggatagtcccacaggtgaa
aagggaatttcaaaaaagaagcccctattgtctgaatcagagttaatatatcatgaacat
aaagctacactaagaagaacacaagttcagcgttcgtttcccagacacaacctgatggat
gctgaagaaattttggattatcatttaaatgatgcatttctttctggaaaagactgtgag
caaacaaaaaagtgtgcaggccagtttggtgaaagatcaaagcgacattcccctgttggt
ggtagcagaccatactctgataattcagcacacgatggccggagaagacatgaagaaccg
aattcttcaaaaggtatccgagaggagcagagatccccattcagtgaccactacaagaga
tcaagatacgaagatacagagaaacaatttactgatgggccaggatcacgatttggggtt
actgatggaaagcaaaggtttagttcattgatggaagaaagatctcattttgagggctct
cctagacaccctggcgcaagggctggtggagatggacaaacaacgcattttgaagggcca
gctaatacaaattctagaattgaaggaccacaagcacaatctaatttaaggtttgagggt
tctctaggccagccaacttctcagtttgacgggcccccaggacaatctggtggaaaaggt
tctttgctgtttgatgggccaccagcacaaatgggtggtggttccttgaggtttgaagga
ccctcagggcaagttggtgcagggactgctatacgatttgaaggtcctatgggacagcca
ggtggagctttgaggtttgatgggcctgcaggccagtctatggccatcatgagatttgaa
gggacccatggtcagccctcaggtgggatgaggtttgagggacctcatggtcatccatcc
tctgggattcggtttgatggcccacatggtaaaccatctgctggaatgaggtttgaggga
ccgcacgatcagccttcgggtaacttgaggtttgatggccagccttcaggtgcaatgagg
tttgaaggtccacatggccagccttcaagtgggataaggcttgaagggcctcttgaccgt
tctgtgggacctcatggtcctccaggaggtggaatgaggtttgagggtccccatgggcaa
ccaatgggacctcatgggcaaccagggtctggtctgcggtttgaagggccacatttacag
ccaatggggcctcttggccaaccagggggtaatttgcggtttgaagcaccacacgggcag
cctatgggtgcacatggacagccagctagtggtctgaggtttgaggggcctcatggccaa
cctatggggtcacatggccaaccaggggttggacccagatttgatgggcctcatagtcag
cctgtgggaccacttggacaaccaggaattgggcccaggtttgagggaccttcagtccag
tctggaggtgggatgaggtttgaagggtctattaaccaagcaggcccaaggtttgatggc
agtcagtcaagatttgatggccagccgtcacatttgcaaagattagatggattacatgta
cagcctggtccaagatgtgaaatgggtcctgctcagcagacgccccctaggttcgaaggg
ccaccaggtcaggtgcaaccacgatttgatacatcaatgcctcaacggtttgacgatcct
caacaccagcagacagcacgctttgatatccctcttggtccaagaattgaaaatgtagct
aatcatcctgcctcaagacttgaaacaccgccttatggacagactggcccttacaatgaa
cctcccaaccagccgccatataatgggccatcgcaaggaatgcagtttcagagacctgag
caaatcttcgataatcctcaaggaccgagcttcaatgggccacctgtttctggagcacag
gccttcgctaatacccttaacagggctcctggaccgcctttttatgatgacaagaatctt
cagggcccccagtatggaaatttcagtagcatgaccttgggaaatgttcagccaccacag
cagggtcctgttatgtcaatagcatcaggtcagcctgtatcttatattcaaggacaacca
ctcttaccagtccatgcacgaaatcctggaagttttgttcagagtcaacctggaaatgtt
cctctttcctaccctgataatcatcttgggcaactggatgtcaatgaattgtactcaaaa
ctgctttccacaggaatactcaaagttttacagcctgattcaactccagcacaagtaaat
gaagtttctactcagccaaccccggaggaggaggaggaggatcaagaccagaatgaggat
caagatgtcccagacttaactaactttgtgattgaagaactgaaacagcgttatgatagt
gttataaacagactctatactggcattcagtgctactcttgtggaatgaggttcacaact
tcacagacagatgtatatgccgatcacttggactggcactatcgccaaaatcgtacagaa
aaggatgtgagcaggaaagtaacccatagaagatggtactacagtttaacggactggata
gagtttgaagaaatagctgatttggaggagcgtgcaaagagtcagttctttgaaaaagtg
catgaagaagttgtgttaaaaacacaagaagctgctaaagaaaaagagtttcagagtgtc
cctgcaggcccagctggagtagatgagagctgtgaaatctgccaagagcaatttgagcaa
tactgggatgaggaagaggaggagtggcacctaaaaaatgccattcgtgtagatgaaaag
atctaccatccctcatgctatgaagattatcaaaagacctcatcatttgattcaacacca
tctcctagcaagacacctgcagaaaacccactaaatattatgttgagtattgtcaagcaa
gaagtacaggattcctgtaacagtcccaaaatcaaagaagagcctgaggaaaagcctgag
gaatgcatggaagggggcctgcctgcatctgtcgaaattaaaacagaacctgaaaaggtg
gagtcagcttaa
DBGET
integrated database retrieval system
