Varanus komodoensis (Komodo dragon): 123033499
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Entry
123033499 CDS
T07701
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03030
DNA replication
vko03410
Base excision repair
vko03420
Nucleotide excision repair
vko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123033499 (LIG1)
03410 Base excision repair
123033499 (LIG1)
03420 Nucleotide excision repair
123033499 (LIG1)
03430 Mismatch repair
123033499 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vko03032
]
123033499 (LIG1)
03400 DNA repair and recombination proteins [BR:
vko03400
]
123033499 (LIG1)
Enzymes [BR:
vko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123033499 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
123033499 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
123033499 (LIG1)
DNA replication proteins [BR:
vko03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
123033499 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
123033499 (LIG1)
DNA repair and recombination proteins [BR:
vko03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
123033499 (LIG1)
NER (nucleotide excision repair)
Other NER factors
123033499 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
123033499 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
123033499
NCBI-ProteinID:
XP_044306050
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MQSTIRSFFQPLARTHLGNETTENNHLEEALTPKKKNVLKHSEQLVNGTALHTNSSVNPA
AKNATQTLNSEDEEDPEKPRQKDTQEGGSNQTPDCSPEKKIPAKSISPSTSPSTSNSLST
SSIPRRKTARKQLPKRKAEEEINGHDSSLEDISAKRQKVDDGNGSKGEPGESPMEMEKEK
DEDSELEEHEAEKDTKEEKMSESPKSSSKPISSFFAPRKASVKAEKKQMPAIGENTPAPK
SHNEGSSHTLSNMTGNSLKPSLTLEPADYNPTKSNYHPVHDACWGPGQRVPYLAVARTFE
LIEEESARLKIIETLSNLFRSVIALSPEDLLPCIYLCLNQLGPAYEGLELGIGKTILMKA
LAQATGRQLDQIKAEAAEKGDLGLVAESSRTTQGTVFAPPKLGVAAVFGKLQAIGRMAGS
ASMNKKIDIIKSLFVACRHSEARYIARSLEGKLRIGLAEQSVLSALAQAASLTPPRQKFP
PDILDAAKGKSAEARKAWLDERVLIVKQAFCELPNYGTIVPVLLKHGVESLPQHCKITPG
IPLKPMLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGDVYIYSRNQENNTTK
YPDIISRIPKVKKSSVQSCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVDAAEIRVQVCV
YAFDMLYLNGQSLVQKPLSQRRALLHDSFTEVEGQFLFATSVDTTNTDEIAEFLERSIKD
SCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGG
FLLACYDEESEEFQSICKIGTGFTDEVLEKLHNSLKEYVIPQPRPYYRWGGPAEPDHWLE
AQHVWEVKCADLSISPVHRAAVGLVDEEKGISLRFPRFLRVREDKKPEEATASTQVAELY
RKQQQIQNQQPVEKGDDDFY
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaccataagatcattcttccagcccctggcacgaacacatcttggcaatgag
acaacagagaataatcacctggaagaagcactcacccccaaaaaaaaaaatgttctgaaa
cattctgaacagctggtaaatggtactgcactccatacgaattcctcagtgaatcctgca
gccaaaaatgccacccagacacttaacagtgaagatgaagaggatcctgaaaaaccaagg
caaaaggatacacaggaaggtggtagtaatcagacacctgactgttctcctgagaaaaag
atccctgcgaagagcatctcgccaagtaccagcccatctacttctaattcgctctcaacc
tccagtatcccaaggcgtaaaactgcccgtaaacagctccctaaacgtaaagcagaggaa
gaaatcaatggccatgatagctccctggaggacattagtgccaaaaggcagaaggtagat
gatggaaatggctccaagggggaaccaggtgagagtcccatggagatggaaaaagagaaa
gatgaggattcagaattggaagagcatgaagcagaaaaagataccaaggaagagaagatg
tcagaatcccctaaatcatctagcaaacccatctctagtttttttgcccccaggaaagcc
tctgtgaaggcagagaaaaaacagatgcctgcaataggagaaaacacacctgcaccaaag
agccataatgaaggcagttctcatacactgagcaatatgactgggaattctctcaagcca
tctcttacacttgaacctgctgattacaaccctacaaaaagcaactatcatcctgtccat
gatgcttgctgggggcctggccagagggtaccatacttagctgtggcacgcacttttgaa
ttgattgaggaggagtctgcacggctgaaaattatagagacactgagcaacctgttccgg
tctgtgatagccctgtctcctgaagacctactgccctgcatctatctgtgtctcaatcag
ttaggtccagcatacgagggcctagagctgggcattggcaaaaccattctcatgaaagct
ttggctcaggccacaggtcgacaactggatcagatcaaggcagaggcagctgagaaggga
gacctgggtttagttgctgagagtagccgcaccacacaaggcactgtgtttgccccaccc
aagcttggtgtagccgcagtctttggcaaactgcaggcaattgggcgcatggcaggaagc
gcttccatgaacaagaagattgacattatcaagtccttgtttgttgcttgccgccattca
gaggcccgctacattgctcggtcactggaaggaaagctgcggattggattagcagagcag
tctgtcttgtcagctttagcccaggcagcatcactcactcctcccagacaaaaattcccc
ccagacattttggatgctgcaaagggcaagtctgcagaggcacgcaaagcctggctggac
gaaagagtcttgattgttaagcaggccttctgtgagctgccaaattatggcacaattgtc
cctgtccttctgaagcatggtgtggagagtcttcctcaacactgcaagatcacaccagga
attcccctgaagcctatgctggctcacccaaccaagggaattggggaggtattaaagcgc
tttgaagaggctgcttttacttgtgaatacaaatatgatggagagcgagcacagattcac
atcctggagaatggggatgtgtatatatacagccggaatcaagaaaacaacacgaccaag
tacccagacatcatcagccgtatccctaaggtgaagaagagttctgtgcagtcatgcatc
ttggatgcagaggctgtggcctgggacccagactccaagcagatccagccattccaggta
ctgaccacccgcaagcgcaaggatgttgatgctgcagagatcagagtgcaggtgtgtgtg
tatgcatttgacatgctctacctcaatgggcaatctctggtccagaaacccctgtctcag
cgccgggccttgctgcatgattccttcactgaggttgaaggacagttcctctttgccacc
tctgtggatactactaacactgatgagatagcagaattcctggaacgctccatcaaagac
tcatgtgaaggtctaatggtgaaaacactggaagtggatgccacatatgaaattgcaaag
agatcccacaactggctgaagcttaaaaaagattacttggagggtgttggagacaccttg
gacctggtggtgattggtgcctacctgggcaaaggcaaacgtgcaggcacatatggtggc
tttctcctggcctgctatgatgaagaaagtgaggagttccagagtatctgcaagattggc
actggattcacagatgaggtcctggagaaactccataattctctcaaggaatatgtgatt
ccacaaccacggccatactaccgctggggtgggccagctgaacctgaccattggctggag
gcccaacatgtctgggaagtgaaatgtgctgatttatctatttctcctgtccacagagct
gcagttggtttggtggatgaagaaaagggtatctctctacgcttccccagattcctgcgt
gtccgagaggataagaaaccagaggaagccactgccagcacccaggttgctgagctatac
cgaaagcagcaacagatccagaatcagcagccagtggaaaaaggagatgatgatttctat
taa
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