Vulpes lagopus (Arctic fox): 121477049
Help
Entry
121477049 CDS
T07435
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121477049 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vlg03400
]
121477049 (LIG4)
Enzymes [BR:
vlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121477049 (LIG4)
DNA repair and recombination proteins [BR:
vlg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121477049 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
121477049
NCBI-ProteinID:
XP_041587163
LinkDB
All DBs
Position
16:4490996..4623993
Genome browser
AA seq
911 aa
AA seq
DB search
MAATQTSQTVASHVPFADLCSTLERIQRSKGREEKTRHFREFLDSWRRFHDALHKNQKDV
RDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTPTGTRG
DAGDFATIAYFVLKPRCLQKGSLTVQQVNDILDSIASNNSARRKDLIKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSEQSVFSAFHNDAAELHNVTTDLEKVCRQLHDPSIGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYKD
QFGDSPREGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKALPSSILC
GTEKPEVYIEPCNSVIVQVKATEIVSSDMYKTGCTLRFPRIEKIREDKEWHECTTVDDLE
QLRGKASGKLASKHLDIGGDDEPQEKKRKAAPKIKKIIGIIEHLKAPNLTNINKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNQLKEVFSG
IKNSSKQTPREMASLIADLEYRYSWDRSPLCLFRHCIVYVDLYAVINDLSTKIEGTRLAI
TALELQFHGAKVVSCLAQGVSHVIIGEDHSRVAVLKSFRRTLKRKFKILQQDWVTESIDK
CELQEENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacacagacttcacaaactgttgcatctcacgttccttttgcagatttgtgt
tcaactttagaacgaatacagagaagtaaaggacgtgaagaaaaaaccagacacttcaga
gaatttttagattcttggagaagatttcatgatgcccttcataagaaccaaaaagatgtc
agagactctttttatccagcaatgagacttattcttcctcagctagaaagagagagaatg
gcctatggaatcaaagaaactatgcttgctaaactttatatcgaattgcttaatttacct
aaagaaggaaaagacgcccttaaacttttaaattacagaacacccactggaactcgtgga
gatgctggggactttgcaacaattgcgtattttgtgttgaaaccaagatgtttgcagaaa
ggaagtttaaccgtacagcaagtaaatgacattttagactcaattgccagcaataattct
gccagaagaaaggacctaataaagaaaagtcttcttcagctaataactcagagttcagca
ctggaacaaaagtggcttatacggatgattgtaaaggacttaaaacttggttttagtgag
caatctgtattctctgctttccataatgacgctgccgagttgcataatgtcactacagat
ctggaaaaagtctgtaggcaactgcatgatccttccataggactcagtgatatttctatc
actttattctctgcctttaaacctatgctggctgctatagcagatattgagcgaatagag
aaggacatgaaacaccagagtttctacattgaaaccaagctagatggtgagcgtatgcaa
atgcacaaagacggggatgtgtatcagtatttctcccgaaacggatataactataaggat
cagttcggcgattctccacgggaaggttctcttacaccgttcattcacagtgcattcaaa
acagatgtacagatctgtatcctggatggcgagatgatggccttcaaccctaatacacaa
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaggattctgatctg
caaacctgttattgtgtttttgatgtactgatggttaataataaaaagctgggacgtgaa
accctgaaaaagaggtatgaaattcttactagtgtttttacaccaataccaggtagaata
gaaatagtgcaaaaaacacaggctcatactaagaaagaggtaatcgatgctttgaatgaa
gcaatagataaaagagaagagggaatcatgataaaacatcctctatctatttacaagcca
gacaaaagaggtgaaggatggttaaaaattaagcctgagtacgtagatgggctgatggat
gaactggacatcttaattgttgggggctattggggcaaaggttcacgaggtggaatgatg
tctcattttttgtgtgctgtagcagagaagcctcctcctggtgaaaaaccgtcagtgttt
catactctgtgccgtgttggttcaggttatactatgaaagaactgtatgatctgggttta
aaattggccaaacattggaagcctttccataaaaaagctctaccaagcagcattttatgt
ggaacagagaagccagaagtatacattgagccttgtaattctgtcattgttcaagttaag
gcgacagagattgtctccagtgatatgtataaaactggctgcacattgcgttttccacgg
attgaaaagataagggaagacaaggagtggcatgaatgtactaccgtggatgacttagag
caacttcgagggaaagcgtctggaaagcttgcatctaaacaccttgatataggtggtgat
gatgaaccacaagaaaagaagcggaaagctgccccaaagattaagaaaattattggaatt
atcgagcacttgaaagcacccaaccttactaatataaataaggtttctaatatatttgaa
gatgtggagttttgtgttatgagtggaacagacagccatccaaagcctgacctagagaac
agaattgcagaatttggtggttatatagtacaaaacccaggcccagacacgtactgcgtg
attgcaggatcagagaacatcagagtaaaaaacatcatttcttcaaataaacatgatgtc
gtcaagcctgagtggctgttagagtgttttaagaccaaaagctgtgtgccgtggcagccc
cgctttatgattcacatgtgcccatcgacaaaagaacattttgcccgtgaatatgattgt
tatggtgacagttattttgttgatacagatttgaaccaactgaaggaagtgttctcagga
attaaaaattctagcaaacaaactccaagagaaatggcttctctgattgctgatttagaa
tatcggtattcctgggaccgctccccactctgtctgttccgacattgtattgtttatgtg
gacttgtatgctgttattaatgacttgagtaccaaaatcgagggaacaagattagcaatt
acagctttggagcttcaatttcatggagcaaaagtagtttcttgcttagctcagggagtg
tctcatgtaatcattggggaggatcatagtcgtgttgcagttttaaaatcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtaactgagtcaatagacaag
tgtgagttgcaggaggaaaatcaatatttggtttaa
DBGET
integrated database retrieval system
