Vulpes lagopus (Arctic fox): 121484914
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Entry
121484914 CDS
T07435
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03030
DNA replication
vlg03410
Base excision repair
vlg03420
Nucleotide excision repair
vlg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121484914 (LIG1)
03410 Base excision repair
121484914 (LIG1)
03420 Nucleotide excision repair
121484914 (LIG1)
03430 Mismatch repair
121484914 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vlg03032
]
121484914 (LIG1)
03400 DNA repair and recombination proteins [BR:
vlg03400
]
121484914 (LIG1)
Enzymes [BR:
vlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121484914 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
121484914 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121484914 (LIG1)
DNA replication proteins [BR:
vlg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121484914 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121484914 (LIG1)
DNA repair and recombination proteins [BR:
vlg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121484914 (LIG1)
NER (nucleotide excision repair)
Other NER factors
121484914 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
121484914 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Presenilin
Motif
Other DBs
NCBI-GeneID:
121484914
NCBI-ProteinID:
XP_041600658
LinkDB
All DBs
Position
2:164645386..164685334
Genome browser
AA seq
913 aa
AA seq
DB search
MQRSIMSFFYPKKEGKVKRPEKETSNSIRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKAQKPAPGSPQGSPPSPVTYPESSPSLSSTSPVDVSAGIPKR
RTARKQLPKRTIQDVLEEQSKDEDREAKKKKEEEAETPPESLSESEVTQEKEAEGEDQPV
TSPEHRETSPEPPVDSTLEPAVSGKQEAQKEDSAKLPTRAPKTVSSFFAPRKPATKKEGK
EEDPGTPRQEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSAR
LRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQ
LDSVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKID
VIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPSAVVDAGK
GRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLA
HPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRI
PKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYL
NGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVK
TLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDE
ESEELQAICKLGTGFSDEELEEHYQRLQTLVLPTPRSYVRVDGAVAPDHWLDPSAVWEVK
CADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSGQVACLYMKQSQIQN
QQGADLDSDSDFY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaggcca
gagaaggagacctccaacagcatcagagagacagagccacctccaaaggtggcactgaag
gagcggaatggagaggtgcctgaaagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggatgaagccctcacgccatccaaagcc
cagaaacctgccccaggctctccacaaggctcccctcccagccctgtcacatatcccgag
agcagcccttccctctccagtacctctcctgtggacgtctcagcagggatcccaaagcgg
cgcacagctcggaaacagcttcctaagcggacaatacaggatgtcctggaagagcagagc
aaggatgaggacagagaggccaagaagaagaaggaggaagaagcagagaccccaccagaa
agcctgtcagaatctgaagtgacccaagagaaggaggcagaaggagaggaccaacctgtg
acatcccctgaacatcgagagacctccccagagcccccggtggatagcacgttggagcct
gcggtgtctgggaagcaggaggctcagaaggaggactcggctaagctgcccaccagagcc
cccaagacggtcagcagcttctttgccccacggaaaccggcaaccaagaaagaagggaaa
gaagaggaccctggcactccaaggcaggaggagaccaagggacccctggaccctcccagc
tacaatcctgccaagaacaactaccatcccattgatgatgcatgctggaagccaggccag
aaggtcccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcgg
ctccggatggtggagacgctgagcaacttgctgcgctctgtggtggccctgtcacctccg
gacctcctccctatcctctacctcagcctcaaccgtcttgggccgccccagcagggtctg
gaacttggtgtcggtgatggtgttctcctcaaggcggtggcccaggccacagggcggcag
ctggactctgttaaagcagaggcagctgagaagggtgacgtggggctggtggccgaaaac
agccgcagtacccagaggctcatgctgcccccacctgctctcaccgctgccggggtcttc
gccaagttccgagacattgcccggcttgctggcagtgcctccacagccaagaagatagat
gtcatcaaaggcctcttcgtcgcctgccgccactcagaagcccgattcattgccagagcc
ctgagtggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctcgcccag
gccgtgagcctcacgcccccaggccaagaattcccctcggccgttgtggatgctgggaag
ggccggacggcagaagcccgaaagacgtggctggaggagcaaggcatgatcctgaagcag
acgttctgcgaggtgcccgacctggaccggatcatccctgtactgctggagcatggcctg
gagcacctccccgagcactgcaggttgagcccaggggttccactgaaaccaatgctggcg
caccccacccggggtgtcagcgaggtcctaaaacgttttgaagaggcagctttcacctgc
gagtacaaatacgatgggcagagggcacagatccacgttctggaaggtggggaggtgaaa
atcttcagcaggaatcaggaagacaataccggaaagtacccagacatcatcagccgcatc
cccaagattaaactcccgtcagtcacgtccttcattctggacacagaagccgtggcatgg
gaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggag
gtggatgcagcagagatccaggtgcaggtgtgtctatatgccttcgacctcatttacctc
aatggagagtccctggtacgtgagcctctttcccgacgccggcagctgctccgggagaac
tttgtggagacggagggcgagtttgtgttcgccacctccctggacaccaaggacacagac
caaattgccgagttcttggagcagtctgtgaaagactcctgtgaggggctgatggtgaaa
actctggacgtcgatgccacctatgagatcgccaagagatcccacaactggctcaagctg
aagaaggactacctcgatggtgtgggcgacaccctggaccttgtggtgattggtgcctac
ctgggccgtggcaaacgggctggccgctatgggggcttcctactggctgcctacgatgag
gagagtgaggagctccaggccatatgcaagcttggaactggcttcagtgatgaggaactg
gaggagcactaccagaggctccagaccctggtgctgcccaccccacgctcctatgtccgg
gtcgacggtgctgtggcccccgatcactggctggaccccagtgccgtgtgggaggtgaag
tgtgcggatctgtccttgtcgcccatctaccctgctgcccggggcctggtggatggtgag
aaggggatctcccttcgctttcctcggtttatccgcgtccgtgaagacaagaagccagag
gaggccaccaccagtggccaggtggcctgcctgtacatgaagcagagtcagattcagaac
cagcagggcgcggacttagactctgactcagatttctactag
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