Vibrio nigripulchritudo: VIBNI_A1071
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Entry
VIBNI_A1071 CDS
T02871
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VIBNI_A1071 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A1071 (mfd)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIBNI_A1071 (mfd)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VIBNI_A1071 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCO57222
UniProt:
U4KAF2
LinkDB
All DBs
Position
1:complement(1145819..1149277)
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AA seq
1152 aa
AA seq
DB search
MPNSHLLSLALPSGAGDKKHVGNLKGSALSVAIAQLSEQHSGHTLLVVPDPQLALKLTAE
VEQFTQQPVHMFPDWETLPYDNFSPHQDIISDRISTLYQLPTQSNGITVIPVSTLLQRQS
PRDFLMQHTLMVKNGDRYSLEALRLQLEKSGYRHVDQVFGPGEYASRGSIIDLYPVGSND
PYRIDFFDDEIDSIRTFDPENQRSIDDIPEIRLLPAHEFPTTDQAIEDFRGRWRQKFEAR
REPESIYMQISKGTWPAGIEYWQPLFFEHTETLFDYLPDNTLLISVGNLENAIDTFLGDV
DYRFDQRKIDPLRPLLEPELLWLKKDELFSHFKSLPQSLLSAEEVAKKGGRSNEKIDALP
DLHVQHQNKEPMAALRQFVEQFSGKIVFSVESEGRREALLELLQRIKLKPVECTSLNDAL
AADTKINLILGAAEHGFIYEPSQIALICESDLLGDRVIQRRKKDRKAVNSDTVIRHLAEL
KPGQPVVHLDHGIGRYTGLQTLEAGGMPTEYVTLEYQDGAKLYVPVSSLNLISRYSGGAE
DSAPLHKLGGEAWAKARRRAAEKVRDVAAELLDVYAKRELKPGFKFKLDREEYATFKSTF
PFEETDDQATAINSVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILADVEEGKVDIIIGTHKLLQND
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQSEDSVTREAVLREIMRGGQVYFLHNQVETIEKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLRDQTEVELRLPALLPDDYI
PDINTRLSMYKRIASVSNENELAEMKVELIDRFGTLPDAAKNLLAVSEVKQKAGTMHIKK
IEAHAKGGFIEFYPTADINPAFLVKLLQSAPQKYGMEGPTKLKFALPLTDRRERVRFIND
LLQQFAENRLPS
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctaattcacatcttctttctctggcgctgcctagcggcgcgggagataaaaagcac
gtcggtaatctaaaaggctcggctttatctgttgccattgctcagttgtctgagcaacac
agtgggcacacacttcttgttgtccccgatcctcagcttgcgctcaagcttacggctgaa
gttgaacagtttacccaacaacccgttcatatgttcccagattgggaaactctgccttac
gataacttttctcctcatcaggacatcatttctgatcgaatttcgacgctgtatcaactg
ccaactcaaagtaacggcattaccgtgataccagtaagcaccttgcttcagcgtcagtca
ccacgtgactttttgatgcagcacaccctgatggttaaaaacggtgaccgctattcactg
gaagcacttcgcctgcaactggagaagtcgggctatcgacacgttgatcaggtgttcgga
ccgggtgaatacgccagtcggggttccatcattgatttgtacccggtgggcagcaacgat
ccttatcgtatcgatttctttgatgatgaaattgacagcatccgcaccttcgatccggaa
aatcagcgttccatagacgacattccggaaattcgtctgcttcctgctcacgagtttcca
acaacagatcaggcgattgaagacttccgtggacgctggagacaaaagttcgaagctaga
cgcgaacccgaatccatctatatgcagatcagcaaaggaacctggccggcaggtattgaa
tactggcagcctcttttcttcgagcacacagaaaccttgttcgactatctgcctgataac
acgttgctcatctctgttggcaatttagaaaatgccatcgacactttccttggcgacgtt
gattaccgattcgaccaacgcaagattgatccactgcgtccgctacttgagcctgaacta
ctgtggctcaagaaggacgaactcttttcacacttcaaatcgcttccacaaagcctgtta
agcgcagaagaagtcgctaaaaaaggcggaagaagtaacgaaaagattgatgctctgcca
gatttgcatgttcagcatcagaacaaagagccaatggcggcattgaggcagtttgtagag
cagttcagcgggaaaatcgtattctctgttgaatccgaaggtcgccgtgaagcattatta
gaattacttcagcgaatcaaactcaagcctgtagagtgcacgagtttgaatgacgctctc
gctgccgataccaagatcaatctgattcttggcgcagcggagcatggttttatttacgaa
ccatcccaaatagcactgatctgtgagagcgacttgctcggcgatcgggtgattcaaaga
cgtaaaaaagatcgaaaagccgttaattcggatacggtgattcgtcatctggccgagcta
aaacccggtcagccagtcgttcacctagatcatggtattgggcgatacaccggtcttcag
acattagaagcaggtggaatgcccaccgaatacgtgaccttggagtaccaggatggtgcc
aaactttacgtaccagtttcttcactgaacctgatcagccgctattctggaggcgcagaa
gacagcgcaccactgcacaaactcggtggcgaagcctgggcaaaagcaagacgcagagcc
gctgaaaaagtccgtgacgttgcagccgagctgctcgatgtttacgcaaaacgcgaactc
aaacctggttttaaattcaagctggaccgagaagaatacgcgacatttaaatctaccttt
ccttttgaagaaaccgatgatcaagccacggcgatcaactcggtcctttcagacatgtgt
cagccaaaagcaatggaccgactggtttgtggtgatgtgggctttggtaaaacagaagtg
gcaatgcgtgccgcgtttgttgccactgacaacagcaaacaggtcgcggttctggttccc
acaaccctactcgcccagcagcactttgaaaactttcgagatcgctttgccaacttaccg
attcgggttgaggttttgtcccgatttaaatcggcaaaagaacagaagcaaattctggcg
gatgtggaagaaggcaaagtcgacatcatcatcggaacgcacaaactgcttcagaatgac
atcaaattcaaagatcttggtctgctcattgtagacgaggaacaccgatttggcgttcgt
cagaaagaaaaagtgaaagccatgcgtgcggatgtggatatcctcactcttaccgccacc
ccgatccctcgaaccctgaatatggcgatgagtggaatgcgtgatttgtcgatcattgcg
actccaccagcaaggcgtttagccatcaaaacctttgtgcgtcagagcgaagacagcgtc
acccgtgaagcggtgctccgtgaaatcatgcgtggtggacaggtttacttcctacataat
caggttgaaaccattgaaaaagtggcagcggatctggaaaaactgatcccggaagcccgt
gtaacagtggcacatggtcagatgcgcgaacgagaacttgagcgcatcatgaacgacttc
taccatcaacgtttcaacctgctggtgtgtaccacgattatcgaaacgggcattgatgtc
ccgaccgccaataccatcattatggacagagccgacaaccttggtctggctcagttacat
cagttacgtgggcgtgtgggtcgttctcatcatcaggcatacgcttacttgttaacgcct
cacccgaaagcgatgactaaagacgccatcaaacgtttagatgcgattgcatcactggaa
gatctgggggcgggcttcacgctggcaactcacgatctggaaattcgtggtgcaggtgaa
ttactaggtgatgagcaaagtggtcagattcagtctgttggctttacgctctacatggag
atgctagaacaagcagttgaagcgttgaaagaagggaaagagccgtctctcgatgaactg
cttcgtgaccagaccgaagttgagcttagattacctgccctgctccctgacgactatatt
ccagacatcaatacgcgcctttctatgtacaagcgcattgccagcgtcagcaatgaaaac
gaactggcagaaatgaaagtggaacttattgatcgctttggaaccttacctgatgccgct
aagaatttgctggcggtcagcgaggtcaaacagaaagcgggaaccatgcatatcaagaaa
atcgaggcacatgctaaaggaggatttatagaattttatcctaccgctgacataaaccct
gcgtttcttgttaaattgctgcaatcggcaccgcaaaaatatggcatggaaggtccaacc
aagttgaagtttgcgctaccattaaccgatcgtcgggaaagagtgcgttttattaacgac
ttacttcaacagtttgcagagaatcgcctgccaagttaa
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