Veillonella nakazawae: VEIT17_04550
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Entry
VEIT17_04550 CDS
T06972
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vnk
Veillonella nakazawae
Pathway
vnk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VEIT17_04550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnk03400
]
VEIT17_04550
Enzymes [BR:
vnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VEIT17_04550
DNA repair and recombination proteins [BR:
vnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VEIT17_04550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
TRCF
DEAD
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBU34009
LinkDB
All DBs
Position
533464..536565
Genome browser
AA seq
1033 aa
AA seq
DB search
MWERDLAFFWPNIPVLSFPITDNVEFTTTARSLEDQGAQMRALALLAWQEPAVVIANAEE
VTQYVVSPQYLKGQSLHFSLNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRGDILDIY
PVNSEHPIRIEFFGDEIDTLRFFSVENQRSIEQIDSYTVTPFFLGKSDADCTLLSFVKEG
TLIYDEPGRIQEALKKFLKEDPTHRKNHCDWSELQRTVEATNQVAFTFMQQRSIGLPGFN
PIGIQGKTMTSFERQIPLLTDEIKQWHRLNHQVVLVLNNQQRREGIERALEGEGIAFVHS
EEWIAKPNTVVILQGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKKGQEINYFTDL
TPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKYIGNEG
DVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQEFEDAF
PYEETEDQLQATAEIKASMEKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP
TTVLAQQHFQTFWNRFAPFGVKVDVLNRFRSTSEKKQVLKGVEDGSIDVLIGTHSLLNKK
VVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVIN
TPPEERLPVQTYVVEYDMNIVADAIKRELARGGQVYFVYNRVASINHMGELLEAALPGLR
YAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLY
QMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGN
LLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAFIDDAYIKDS
ARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGIKSIVR
RDQQLTIHWHDDSKMADWDMGAVREDLWKKMKFADTKPATLYVSLKGMKGSILTITEAVM
KALSQKSSSKEGL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaacgagatttagcctttttctggcctaatatcccagtcctatcatttcctata
actgacaatgtggagtttacaacgactgctcgtagccttgaagatcaaggtgcacaaatg
cgtgctttagcattgctagcatggcaagaacctgccgtagttatagcgaatgcagaagag
gttacacaatatgtagtatctccacaatatttaaaaggccagtcgttacatttttctttg
aatgatacgattgaacgcgatacagctcttgaacagcttgttacaattggatatgaacgt
gtagaccaggtggaacaacgtggtcattttgccgtgcgtggggatattctagatatttat
cctgttaatagtgaacatccaatacgaattgagttctttggcgatgaaatcgatacattg
cggttcttctctgttgagaaccaacgttctattgaacaaattgattcgtatacggtgaca
ccgttcttccttggtaaaagtgatgcagattgtaccttattatcctttgtgaaagaaggg
actctcatttatgatgagcccggtcgtatccaggaagcattaaagaagttccttaaggaa
gatcctacacatcgtaaaaatcattgcgactggagtgaattacaacgtactgtagaggct
acaaatcaagtagctttcacatttatgcaacaacgctctatcggtttacctggatttaat
ccaatcggtattcaaggtaaaacgatgacgagctttgaacgtcaaattccactcctaaca
gatgaaattaagcaatggcatcgcctcaatcatcaagttgtattggtattaaataaccaa
caacgacgagaaggtattgaacgagctcttgaaggtgaaggaattgcctttgttcatagt
gaggaatggattgcaaaacctaatacggtcgttattttgcaaggtttattgaccgatggt
tttgaattacctaatagccatctcgtagttgttgtagaaggcaatatttacggacaacaa
aaacgtaagcttcgcaacaagcctaaaaagggccaagaaatcaactactttacggactta
acaccaggtgactatgtagttcatagcatgcatggtattggtaagtatattggccttaaa
acgatagaaacggaaggcattcatcgcgactatattgaaatcgcttatgcgggaacggat
aaactgttcttacctgcaaacaatttagatcagttacaaaaatacatcggtaatgaaggt
gatgtgcctcgtattcataagatgggtggtcgtgactgggctaaggttgttacaaaggca
aaaaaatccattgatgatttggcagataagctcgttgagatctatgcacaacgagaaatt
acagaaggctttgcatttttgccagatcaaccatggcagcaagagtttgaagatgccttc
ccttatgaagaaacggaagaccaattacaggctacagcagaaatcaaggcatccatggaa
aaacctgttcctatggatcgcttgctggcaggtgatgtaggctttggtaaaaccgaagtg
gctatgcgtgccatctttaaggccgttatgagtggcaaacaggttgcggtgctcgtaccg
actacagttcttgcacagcaacatttccaaaccttctggaatcgttttgctccatttgga
gtcaaagtcgatgtgctcaatcgtttccgcagtacatctgagaagaaacaagttctaaaa
ggtgtagaggatggctctatcgatgttctcatcggaacccattcactacttaataaaaaa
gtagtctttaaagacttaggcatgcttgttgttgatgaagaacaacgctttggggtagca
caaaaggaaaaatggaaagagtgggctagtaatattgacgtgctcaccttgagtgcaacc
ccaattcctcggaccttacatatgtctcttgtaggtgttcgggagatgtctgttatcaac
acgccaccagaggaacgattgccggttcagacctatgtggtggaatatgatatgaacatc
gttgctgatgccatcaagcgagaattggcacggggcggacaagtttacttcgtatataac
cgcgttgcatcaattaatcatatgggtgagttattagaagcagcattacctggtttacgc
tatgctattgctcatggtcagatgacgggccgtcaaattgaagaaattatgacggatttc
tatgaaggccattatgatgtattattgtctaccagtatcattgaaaccggcttagatatt
cctaatgccaataccatcatcatttatgatgcggaccgcttaggtttatctcagctatat
caaatgcgtggccgtgtagggcgttctcgtagacgggcttatgcatactttatgtatcgt
cctgataaaatgctctctgaagcggcagaaaagcgcttaaaagctattgaagagttcaca
gagctcggtgctggctttaaattggcgatgcgcgacttagaaattcgcggcgctggcaat
ttattaggctcgcagcaacatggtaacatcgcatccgtcggctttggtatgtacgtaagt
atgttagaagaagccattgcgaaggctcaaaataaagaagttgaacgggaagtatccatc
gatccagctatcgacttagaggtagatgcctttatcgacgatgcgtatatcaaggatagc
gctcgtaagatctccgtatatcaacggttgttacatattaaatccaaagaacagcttgat
gatatgaccgatgaactcatcgaccggttcggtactccaacagatccagtagaccgatta
ttgcgcattgcccaaattaaagagcaagcacgtttacttggcattaaaagtatcgtccgt
agagatcaacagcttactatccattggcatgatgattctaagatggccgactgggatatg
ggggctgtacgagaagatctatggaagaagatgaaatttgcagacaccaagccagccaca
ttatatgtgagccttaaaggcatgaaaggttctattttgaccattacggaagcggtgatg
aaggctcttagccagaaatcatcgtctaaggagggcctatga
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integrated database retrieval system
