Vibrio neocaledonicus: D3H41_06055
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Entry
D3H41_06055 CDS
T06228
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_06055
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
D3H41_06055
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
AAA_22
DZR
zf-tcix
ERCC3_RAD25_C
AAA_30
FAD_binding_4
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QCO85680
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Position
1:complement(1249446..1251197)
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AA seq
583 aa
AA seq
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MYTLRPYQADSVKAVIHYFRKHSTPAVIVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHAKYEGYGLKGSIFSAGLGRKETDQQVVFASVQSVVRNLDSFKNQFSLLVIDECHR
VPDDKNSSYQKVITHLRELNPGIKVLGLTATPYRLGMGWIYQYHTRGQVRTEEPRFFRDC
IFELPIRYLLDENFLTPARMMDAPVLSYDFSQLKPANTGRYKEAEMDMVIDKAKRATPQI
VEQIMQYAKERQGVMIFAATVRHAQEIHGLLPEGETEIVIGDTPTPERDAIIQAFKNRQI
KYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSDGKSECLVLDYAGNSY
DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDSNGFLVEHFGRRCQGYFEDEDTG
EREHCGYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALIFECTEMD
LSVFKSSDGKSQLKVTYSGEPYQGEGNALVHEFWSLSTKKQKQTFKDQFVRPHLADKHRP
FEEASPTRVVANQHRFRLPQFVIARKSGRFWKLRDKIFEDELK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtacacacttcgtccttatcaagccgactcggttaaagccgttattcattactttcgt
aaacactcgacaccagcagtgatcgtactgccaaccggtgcaggaaaaagcttggtgatc
gcagaacttgctcgccttgcgaaaggacgagtgttagtcctcgcccacgtaaaagaactg
gtcgagcaaaaccacgcaaagtatgaaggttatggtttaaaaggttccatcttctcagca
ggattgggacgaaaagaaactgaccagcaagtcgtatttgcttcggttcaatcggtcgta
cgtaacttagattcgttcaaaaaccagttttctctgctcgttattgatgagtgccatcgt
gtgccagatgacaaaaacagcagctaccaaaaagttattactcacttacgagaactgaac
cctggcattaaggtgctgggactaactgcaacgccctatcgtttaggaatgggctggatt
tatcagtatcacacccgaggtcaagtgcgaaccgaagagcctcgattcttccgcgattgt
attttcgaactgccgatccgttacttgctcgacgaaaacttcctcactccagcccgcatg
atggatgcgcccgttttgtcttacgacttctctcagctgaagcccgctaacaccggacgc
tacaaagaagcagaaatggacatggtgatcgataaagccaaacgtgcgactccacaaatt
gttgagcaaatcatgcaatatgcgaaagagcgtcaaggtgtcatgatcttcgctgcaact
gttcgacacgcacaggagatacacggtttattgccagaaggcgaaactgaaatcgtcatt
ggtgatacacctacgccggagcgcgatgcgatcatccaagcgttcaagaatcgtcaaata
aaatacttggtcaatgtttcggtactgacaaccggttttgatgcgccgcatgtcgattta
atcgcgattttgcgaccaacagagtcagtcagtctgtaccagcagatagtaggacgagga
ttacgcttatcagacggaaaatcagaatgtttagtgcttgattacgcaggcaacagctac
gatttataccaacctgaagtcggtgatccaaaaccagactctgacagtgaaattatcacg
attccttgcccggcttgcggattcaataacaacttctggggtaaattggatagtaacggt
ttcttggttgaacactttggcagacgttgccaaggttactttgaagatgaagacacaggc
gaacgtgaacactgtggctaccgttttcgtgccaaatactgtggtgaatgtggtgcggac
aacgatatcgctgcacgaatttgtcatgagtgtgacgcgacgctcgttgacccagataaa
aagctaaaagaagcccttaatctcaaagatgcattaatctttgaatgcacagaaatggac
ctatctgtatttaagtccagtgatggtaaatctcagctaaaagtgacgtattctggtgaa
ccatatcaaggcgaaggcaatgcgttagttcatgagttttggtcattgagtaccaaaaaa
caaaaacaaacgtttaaagatcagttcgtacgcccccacttagcagacaagcatcgccct
tttgaagaggcttcaccgacacgcgttgtcgctaatcaacatcgtttccgtttgcctcag
tttgttattgctagaaaatctggtcgcttttggaagctgcgagataaaatttttgaagat
gagttgaaataa
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