Vibrio neptunius: KW548_12850
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Entry
KW548_12850 CDS
T08906
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KW548_12850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_12850 (mfd)
Enzymes [BR:
vnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KW548_12850 (mfd)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KW548_12850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QXX06013
LinkDB
All DBs
Position
1:2716940..2720401
Genome browser
AA seq
1153 aa
AA seq
DB search
MPITSLLNLANPTGSGDKKQVGNLQGASLALAIAELANQHTSHTLVAVADPQTALKLLQE
VEQFTDQDVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQSSGITIIPVNTLLQRQS
PREFLLQHTLMVKVGDQYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGAND
PFRIDFFDDEIDTIRTFDPENQRSIEDVEDIRLLPAHEFPTTDSAIEDFRIRWRQRFETR
REPESIYMQVSKGTWPAGIEYWQPLFFDCTETLFDYIADNSQLITIGDLEGAIDHFLTDV
DYRYGQRKVDPLRPLLPPEELWLKKDELFRHFKSLPQVQLSADSVTEKLGRTNPAVQPLP
ELAVQHQSKEPMSALRQFSESFNGKVVFSVESEGRREALLELLQSIKLRPIEHISFSAAT
QSSDKFTLVLGASEHGFLFGDNQVALICESDLLGDRVIQRRRKDRKVTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEYQNDAKLYVPVAALNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFVLDRDQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLSND
IKFKDLGLLIVDEEHRFGVRQKEKMKAMRTDVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQSDDAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRLPALLPDDYI
PDINTRLSMYKQIASVSDKTELDELKIELIDRFGLLPDATKNLLSVSEIKLEAGAIKVKK
IEAHDKGGFIEFYPDADINPTYLVKLLQSQPQKFAMEGPTKFKFTVPLVDRRKRIQFVGD
MLGEFQQNLLPQA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcctattacatcgcttttaaatctggctaacccaaccggttccggagacaaaaaacag
gtcggtaacctgcaaggagccagtttggcacttgctattgctgaacttgctaatcaacat
accagccacacactcgtcgctgtcgctgaccctcaaacagcgctaaagctgcttcaagaa
gtcgagcaatttacggatcaagacgtatcgctgtttcccgactgggaaacgttaccctac
gacaatttttctccgcatcaggaaatcatttctgaccgtattgctcgcttgtatcagcta
ccgacccaatccagtggtattaccatcattccagtgaataccctgttgcaaagacagtct
ccaagagaattcttactgcaacacacattaatggtcaaagtgggcgaccagtattcactc
gaaaagttgcgtattcaattagaaaaatccggctatcgacacgtcgatcaagtgtttggc
ccgggcgaatacgccagccgcggttcgattcttgatctctttccaatgggggcaaatgac
ccattccgaatcgacttttttgatgacgagatcgatacgattcgtacttttgatccagaa
aaccaacgctctattgaagacgttgaagatattcgcctactacccgcccatgaatttcca
accacagacagcgctattgaagattttcgtatccgctggcgtcagcggtttgaaacgaga
cgagaacccgaatcaatctacatgcaggtttctaaaggtacgtggcctgcgggcatcgag
tactggcaaccgttatttttcgattgcaccgaaaccttgttcgactacattgccgataac
agccaattaatcacaattggtgacttagaaggcgccattgatcattttctcaccgatgtc
gactaccgttacggccaacgcaaagtggatccactaaggcctctattgccgccagaagaa
ttatggttgaaaaaagacgagctattccgtcattttaaatcactccctcaggtgcaactt
tctgctgattcggtgacagaaaaactagggcgtactaacccagccgttcaaccgctacca
gagttggctgttcagcaccaaagcaaggaacccatgtcggcgcttcgccagtttagcgaa
agctttaatggcaaagtcgttttctcagtcgaatctgaaggccgccgtgaggccttactt
gagcttcttcaaagtattaagcttcgcccaattgaacacataagtttctctgctgcgaca
caaagcagcgataaatttaccttagtacttggtgcttccgagcacggattcctttttggt
gacaatcaggtcgctttgatctgcgaaagcgacttactcggtgaccgagttattcagcgt
cgtcgtaaagatcgtaaagtcactaatagcgatgccgtgatacgcaaccttgctgagctt
aaacccggccagcctgtcgttcacatcgaccacggtattggccgctatattggcctacaa
acgttggaagccggtgggatgactaccgaatacgtcacgctggaataccagaatgacgcc
aagctctacgtgcctgtcgcggcattgaacctcatcagccgttactcaggtggtgcagaa
gaatccgccccattgcacaaacttggtggagaagcttgggcaaaagcacgtcgcaaagcg
gcagaaaaagtacgagatgtcgccgcagagctgcttgatgtttacgctaaacgagaactt
aagccgggttataaattcgtccttgatcgcgatcagtacgcaacattcaaagcgggcttc
ccgtttgaagagacagatgaccagtcaatggcgatcaacgccgtcatgtctgacatgtgt
caggctaaagcgatggatcgtttggtgtgtggtgatgtaggctttggtaaaacagaagtc
gcgatgcgtgcggcgtttcttgccacagacaatggcaagcaagtcgctgtactggtgccg
acgactttgctcgctcagcaacatttcgaaaacttcagagaccgttttgctaatctaccc
attcgcgttgaagtactctcacgcttcaaaacagccaaggaacaaaagcaagtattacaa
gatattgaagatggcaaagtcgacctagtcgtcggtacacacaaactcttgtctaatgac
atcaagttcaaagaccttggcctgctaattgtcgatgaagaacaccggtttggggtccgg
caaaaagagaaaatgaaggcaatgcgcactgatgtcgatattttaacgctcaccgcaacg
ccaatcccacgaacgctaaatatggcgatgagtggtatgcgcgacttatcgatcatcgcc
actccaccagcaagacgtctcgcaatcaagacctttgtcaggcagagtgatgatgcagtc
gtgcgagaggctgtattacgtgaaattatgcgcggtggtcaggtttacttcttgcacaat
caagttgagaccatagagaaagttgctgccgatctggagaagctcattccagaggctcgt
gtgaccgtagcccacggccaaatgcgcgagagagaactcgaacgtatcatgaatgatttt
taccaccagcgctttaacttactggtgtgtaccactatcatcgaaacaggtatcgatgtg
ccaaccgctaataccatcattatggacagagcggataacctcggtcttgctcagttgcac
cagttacgcggtcgcgtaggacgttctcatcatcaggcatacgcttacctgctaacacct
catccaaaagccatcacgaaagatgctattaagcgccttgatgccattgcttcattggaa
gatttaggtgcaggctttactcttgcgactcacgaccttgaaattcgcggggcgggagag
cttctcggtgacgagcaaagcgggcaaattcagtcagttgggtttactttgtacatggaa
atgcttgagcaagccgtcgaggcactgaaggaaggcaaagagccttctctagacgaacta
ctcagagagcaaacagaagtcgagatgcgcttacccgctctactgcctgatgattacatt
ccggacatcaacactcgcctatccatgtacaaacaaatcgccagcgtatcagacaagacc
gagctggacgagctcaaaatcgaactgatcgatcgctttgggcttttaccagatgcaacc
aaaaaccttctatctgtatcagaaataaagcttgaagcgggcgccattaaagtgaagaaa
atcgaagcgcatgacaaaggtggattcattgagttctatcctgacgctgacataaatccg
acctatttggttaaactattgcaatctcaaccacaaaaattcgcaatggaaggcccaact
aagttcaagtttacggtaccattggttgacaggcgtaagagaattcaatttgttggtgac
atgttgggagagttccaacaaaacctattaccacaagcctga
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