Vibrio navarrensis: IF132_10270
Help
Entry
IF132_10270 CDS
T07785
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IF132_10270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnv03400
]
IF132_10270 (mfd)
Enzymes [BR:
vnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IF132_10270 (mfd)
DNA repair and recombination proteins [BR:
vnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IF132_10270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOD69211
LinkDB
All DBs
Position
1:777156..780620
Genome browser
AA seq
1154 aa
AA seq
DB search
MKTVQPILSVCGANGAGDKKHIGCLPGASLALSIAELAKAASSHTVLVVPDPQSALKLQA
EVEQFYREPVTVFPDWETLPYDNFSPHQDIISERIATLFQLPGQTNGITIVPVSTLLQRQ
SPRDFLLQHTLMVKVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLYPMGSH
DPYRIDFFDDEIDTIRTFDPENQRSTDAVQEIRLLPAHEFPTTEAAIEDFRIRWRSQFDA
RREPESVYMQVSKGTWPAGIEYWQPLFFEQTETLFDYVASDSHFITVGDIDLAMDQFLSD
VDYRYEQKKVDPLRPLLPPAQLWLKKDELYARIKPFAQTCLSVAAIEEKAGRSNLPLQAL
PELAVQQNSKEPLAQLRKFSESFNGKIVFSVESEGRREALTELLQGIKLRPTISASLDEA
LQQENRFTLVIGATERGFIHPERGFAFVCESDLLGDRVIQRRKKDKRNVNSDTVIRHLAE
LKPGQPVVHIDHGIGRYIGLETLEAGGIKAEYMMLEYQNEAKLYVPVASLNLISRYSGGA
EESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRGQYASFKSG
FPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLV
PTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILEDVASGKVDILVGTHKLLSS
ELKFNDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLSIKTFVRERDDAVVREAILREIMRGGQVYFLHNQVETIEKVAADLTKLVPEA
RITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQL
HQLRGRVGRSHHQAYAYLLTPYPKSMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAG
ELLGEEQSGQIQSVGFSLYMEMLEQAVQALKEGKEPSLDELLREQTEVEIRIPALLPDDY
IPDVNSRLSMYKRIASVEGEEELNELKVELIDRFGLLPDAAKNLLAISELKILAANIKVK
KIEAHDKGGFIEFYPNADINPAYLVRLLQSQPKKFAMEGPTKFKFSVPLTDRRQRVQFIR
DLLNEFNQNLLPVS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgttcaacctatcttatcggtctgcggcgcaaacggtgcaggcgacaaaaaa
catattggctgcttaccgggcgcatcgctcgcactctccatcgctgaactggcaaaagca
gcctccagccacacagttttagtggtacccgacccacaaagcgcgttgaaactgcaagca
gaagtcgaacagttttaccgtgagccggtgacagtgttccccgattgggagacgctgccg
tacgacaatttctcgccacaccaagatattatttctgaacgcatcgcgaccttgttccaa
ctgccggggcaaaccaacggcatcaccattgttccagtcagcaccttacttcagcgtcaa
tcaccgcgcgacttcctgctgcaacataccttgatggtcaaagtgggcgatcgctattca
ctggaaaaacttcgcctgcaattagacaactccggttatcgccacgtcgatcaagtattt
ggcccgggagagtacgctagccgaggttccattttggacctctatccaatgggcagtcat
gatccttatcggatagatttctttgatgacgaaatcgacaccattcgcaccttcgatcca
gagaatcagcgctctaccgacgccgtacaggaaattcgcctgttgcccgctcacgagttc
cccaccactgaagcggcgattgaagatttccgtattcgctggcgtagccagtttgatgcg
cgccgagaaccagaatcggtttacatgcaagtgagcaaggggacttggccggcgggcata
gaatattggcaaccgctgttttttgaacaaaccgaaaccttgtttgactacgtcgctagt
gattcacacttcatcacggtcggcgacatcgatctggcgatggatcagtttctcagtgat
gtcgattaccgctacgagcagaaaaaagtcgatccgctgcgccccctcttaccaccagcg
caactgtggctaaagaaggatgagctttacgctcgcatcaagccattcgctcaaacgtgc
ctctctgtcgcagccattgaagaaaaagcaggccgcagcaatttgcctctgcaagcacta
cctgaactggccgtgcaacaaaacagcaaagagccgctggcacaactgcgcaaatttagc
gaaagctttaacggaaaaattgtcttctccgtcgaatccgaaggacgacgcgaagcctta
accgagctgttgcaagggatcaagcttcgtccgacgatatcggctagcttggatgaagcg
ttgcaacaggaaaaccgctttactttggtgatcggcgccactgaacgcggctttattcac
cccgagcgcggctttgcttttgtctgcgagagcgatctgcttggcgatcgcgttatccaa
cggcgtaaaaaagataagcgtaacgtcaacagcgataccgttatccgtcatcttgccgag
ctcaaaccgggccaacctgtagtacacattgatcacggtatcggccgctatatcggttta
gagacgctcgaagcgggcggtatcaaagccgaatacatgatgttggagtatcaaaacgag
gcgaaattgtacgttcccgtggcgtcgctaaacctcatcagccgttactctggcggcgcg
gaagagagcgctccgctgcacaaacttggcggcgaagcttgggccaaagcgcggcgcaaa
gcggcggaaaaagtgcgcgatgtcgcggcagagctgctggacgtttatgccaagcgcgag
ctcaagccgggctacaaatttgcgttggatcgtggccagtacgccagctttaaatccggt
tttccttttgaggaaacggacgatcaagcgatggcaatcaacgcggtgttatcagacatg
tgccaagccaaagcgatggaccgcctagtgtgtggtgacgttggctttggcaaaaccgaa
gtggccatgcgcgccgcgtttgttgccaccgacaacagcaaacaggtcgcggtactcgtc
ccaacgaccttgcttgcccagcagcattttgagaactttcgcgatcgctttgccaatctt
ccgatccgagttgaagtgctgtcgcgctttaaatccgcgaaagagcagaaacagatcctt
gaggatgtcgcgagtggcaaggtcgacattctggtcggcacgcacaagctgctctcgtct
gaactcaagtttaacgatcttggcctactgattgtcgatgaagagcaccgtttcggcgtg
cggcaaaaggagaaagtcaaagcgatgcgtgccgatgtcgacattctcactctgactgca
acccctatcccgcgcacactcaatatggcaatgagcggcatgcgcgatttgtccatcatc
gccactccaccagcgcgtcgcctgtcgatcaaaacctttgtgcgcgagcgggatgatgcg
gtggtacgcgaagcgatcttgcgcgaaatcatgcgcggtggtcaggtttacttcctgcac
aatcaagtggaaaccatcgagaaagtcgcagcggatttgaccaaactagtacctgaggcg
cgaattactgtcgcccacggccagatgcgtgagcgtgagctcgaacgcgtgatgaacgat
ttctaccatcagcgttttaatttgctggtgtgtaccaccatcatcgaaacgggtatcgac
gtcccaaccgccaacaccattatcatggatcgcgctgacaatcttggcctcgcccaactg
catcagctacgtggccgtgtggggcgctcgcaccaccaagcttacgcttacttgctgacg
ccgtatcccaaatccatgaccaaagatgcgatcaaacgtcttgatgcgattgcctctctg
gaagatttaggggcgggttttacgttggctacccacgatcttgagatccgcggcgcaggt
gagcttctcggcgaagagcagagcggtcagatccaatcggtcggtttctcactttacatg
gagatgcttgagcaagcggttcaagccttgaaagaaggcaaggaaccgtcactggatgag
cttttacgtgaacaaactgaagtcgagatccgcatacccgccctactcccggatgattac
atccccgacgtcaacagtcgtttgtcgatgtataaacgcattgccagcgtggagggtgaa
gaggaactcaacgagctcaaagtggaattgatcgaccgctttggtttattacccgacgca
gcgaaaaatctcttggcaatctcagagttaaagattcttgctgccaacatcaaagtgaaa
aaaatcgaagcgcatgataaaggcgggtttatcgaattttatcccaacgctgacataaac
cccgcgtatttggtcagactattgcagtcgcagccgaaaaaatttgcaatggaaggtcca
actaagttcaagtttagcgtaccattgaccgaccgccgccaacgtgttcagtttattcgt
gatttactgaacgagtttaatcagaatttattaccagtgagctag
DBGET
integrated database retrieval system
