Vibrio parahaemolyticus RIMD 2210633: VP0975
Help
Entry
VP0975 CDS
T00120
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VP0975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP0975
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VP0975
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VP0975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAC59238
UniProt:
Q87R23
LinkDB
All DBs
Position
1:complement(1014846..1018307)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPTERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIVPVSTVLQRQS
PRDFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEAAVDTFLNDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFAHFKQLPQAQLSLEKVVKRAGRQNLAVQTLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVQESLYHAL
ESDHRFTLILGSAEHGFIHDELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ETAPLHKLGGEAWSKARRKAAEKVRDVAAELLDVYAKRELKPGFKFALDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVREREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRIPALLPDDYI
PDVNTRLSMYKRIASVSDSDELSELKVELIDRFGLLPDAAKNLLAVSELKFAAGSIKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLADRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcaacgatactttccgtcaccaatccaactgaacgtggcgacaaaaaacaa
cttggcaacttacccggtgcagcgctgccactcgccattgccgaactggccaagcagcat
tcaagtcactcactactggttgtgccagacccgcagatcgcgttgaaactgcaagcagaa
atcgaacagtttaccgaccaaccggtaagccttttccctgattgggaaacgttgccatac
gacaatttttctccacaccaagagatcatttctgaccgtattgctcgcctataccaactg
ccgaatcaacgtggcggtgtcactatcgtgccagtcagcactgttcttcagcgccaatct
ccgcgagattttttgttacagcacacactaatggtcaaaacaggcgataatttctcgcta
gaaaacctgagagtgcaattagagaactcgggttatcgtcatgtagaccaagtatttggg
ccgggtgaatacgcgagccgaggttcgattctcgacttattccctatgggcagtgccgat
ccttaccgcattgactttttcgatgatgaaatcgataccattcgcactttcgatccagaa
aatcagcgttctatcgaagatattcagcaaatacaattgctgcctgcgcatgaattccca
acgacgaaagaagcgattgaagatttccgcactcgttggcgcacccagtttgaggcgaga
cgcgagccagaatccatctacatgcaagtcaccaaaggaacgtggccggcaggcattgaa
tactggcaaccactgttcttcgaccataccgaaaccctgttcgactacttacctgaagat
tcgcagctgatcacatacggcgacattgaagcagccgtcgacacattcttaaatgacgtc
gagtatcgctacgatcaaaagaaaattgatcctctacgtccacttcttgccccacacgat
ttgtggctcaagaaagacgaattgtttgcacacttcaaacaacttcctcaggcacagctc
agcctagagaaagtagtgaaacgtgctggccgccaaaacttagcggtacaaacactggca
gaacttggcgttcaacagcaaaacaaagagccattgtctcgtcttcgccaattcagcgaa
caatttacgggcaaaatcatcttttccgtggaatcagaaggtcgacgcgaagccctgact
gaacttttgcaaggcatcaaagttcgcccagtggtgcaagaatcgctgtatcacgctttg
gagtcagaccaccgtttcacgttgattcttggttcagcagaacacggctttattcatgac
gagctgaatttcgcgctgatatgcgaaagtgacttgcttggcgatcgcgtaattcaacgc
cgtcgcaaagacaaaaaagccgtcaacagtgacactgttattcgccaccttgccgaactg
aaaccaggccaacctgttgttcatattgaccacggcatcggccgctacatcggtctgcaa
acccttgaagcggggggaatgaaaaccgagtatgtgacgcttgaatatcaaaacgacgcc
aaactttatgttcccgtttcctcgctaaacttgatcagccgttactctggcggcgctgaa
gaaacggctcctctgcacaaacttggcggtgaagcgtggtcgaaagcacgtcgaaaagca
gctgagaaagtacgcgatgttgcagcagagctacttgatgtatacgcgaagcgtgagcta
aaaccgggctttaaatttgccttggatcgtggccaatacgcgaccttcaaggcaacattc
ccgtttgaagaaaccgatgatcaagccatggcaatcaacgcggtgctttccgatatgtgc
caagcaaaagccatggatcgcttggtgtgtggtgacgttggctttggtaaaacagaagtc
gccatgcgtgcggcctttgttgctacggacaacagcaaacaagttgccgtactcgtgcca
acaaccctgcttgctcagcagcattttgaaaacttccgtgaccgcttcgcgaacttgcca
atccgagtcgaggtgctttctcgctttaaatcagccaaagagcaaaaagtgattttgcaa
gatgttgcggatggcaaagttgatatcgtcgtcggtacgcacaaattgctctccagcgac
atcaaattcaaagatttgggtttgttgatcgtcgacgaagagcatcgcttcggtgttcgt
caaaaagagaaagtcaaagcgatgcgcgctgacgtggacattctcaccctaacggcaacg
ccgattcctcgtacgctgaacatggcaatgagtggtatgcgtgatttgtcgatcatcgcc
acaccaccagcacgtcgtttagctattaagacatttgttcgcgaacgtgaagagtctgtg
gttcgagaagccgtactgcgtgaaatcatgcgtggtggtcaggtttacttcctgcacaat
caggtcgaaaccatcgaaaaaacggcagaagacttacaaaaactcattccagaagcccgt
attaccgtggcacacggtcaaatgcgtgaacgcgaactagaacgtatcatgaatgatttc
taccaccagcgctttaatgtgttggtgtgtaccaccatcattgaaacgggtatcgacgtt
ccgacggccaacacaatcattatggatcgtgctgacaaccttggcttggcgcaactgcat
caattgcgtggccgtgttggtcgctctcaccatcaagcctatgcttatttgttaacgcca
catccaaaagcaatgaccaaagatgccattaaacgtctcgatgccattgcttcactggaa
gacttaggcgcgggctttactctggcaacgcacgatttggaaattcgtggcgctggtgaa
ctgcttggtgacgaacaaagtggtcaaattcaatctgttggttttacactgtatatggaa
atgcttgaacaagcggttgaagcgttgaaagaaggtaaagagccatcattggatgatctg
cttcgcgaacaaacagaagtggaactgagaatcccagcgctactgcctgatgattacatt
ccagacgtcaatacgcgtctgtcgatgtacaaacgaattgcgagtgtgagcgacagcgat
gagctatccgaattaaaagttgagctgatcgaccgctttggcttacttcctgatgccgcg
aagaacttgctggctgtctcagaattgaaatttgccgcaggtagtattaaagcgaagaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggcggaccgacgtaaacgcattcagtttgtacaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
DBGET
integrated database retrieval system
