Vibrio parahaemolyticus RIMD 2210633: VP1214
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Entry
VP1214 CDS
T00120
Name
(GenBank) helicase-related protein
KO
K19789
DNA repair protein RadD
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP1214
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
VP1214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
AAA_22
DZR
zf-tcix
ERCC3_RAD25_C
AAA_30
FAD_binding_4
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BAC59477
UniProt:
Q87QD5
LinkDB
All DBs
Position
1:complement(1273742..1275493)
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AA seq
583 aa
AA seq
DB search
MYTLRPYQADSVKAVIHYFRKHSTPAVIVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHAKYEGYGLKGAIFSAGLGRKETDQQVVFASVQSVVRNLDSFKNQFSLLVIDECHR
VPDDKNSSYQKVITHLRELNPGIKVLGLTATPYRLGMGWIYQYHTRGQVRTEESRFFRDC
IFELPIRYLLDENFLTPARMMDAPVLSYDFSQLKPANTGRYKEAEMDMVIDKAKRATPQI
VEQIIQYARERKGVMIFAATVRHAQEIHGLLPEGETAIVIGDTPTPERDAIIQAFKNREI
KYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSEGKNECLVLDYAGNSY
DLYQPEVGDPKPDSTSEIITIPCPACGFNNNFWGKLDSNGFLLEHFGRRCQGYFEDEDTG
EREHCGYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALIFECTEMD
LSVFKSNDGKSQLKVTYSGEPYQGEGHALVHEFWSLNTKKQKQTFKDQFVRPHLADKHRP
FEEASPTRVVANQHRFRLPQFVIARKSGRFWKLRDKIFEDELK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtacacacttcgcccatatcaagctgactctgttaaagccgttattcattactttcgt
aaacattccacccccgcagtgatcgtactaccaactggtgctgggaaaagcttagttatt
gcagaactggcacgccttgccaaagggcgtgtgttggttttggcccacgtaaaagagctg
gtggaacaaaaccacgcgaaatatgaaggctacggtttgaaaggcgccatattttcggca
ggattaggaagaaaggaaaccgaccaacaagtggtgtttgcctcggtgcaatcggtagtg
cgcaatttggactcattcaaaaaccagttctcacttctggttatcgatgaatgtcaccgt
gtgccagacgataaaaacagcagctatcaaaaagtgattacgcaccttcgagagctcaac
cctggcatcaaagttttgggcttaacggcaacaccgtatcgtttaggaatgggatggatt
tatcaataccacacccgaggtcaagtacgcaccgaagagtcgcgctttttccgcgactgc
attttcgaactgccgatccgttacttgcttgacgaaaacttcctcacccctgcacgcatg
atggatgcgcccgttttgtcttacgacttctcgcagctgaaacccgctaataccggacgc
tacaaagaagcggaaatggacatggttatcgacaaagccaaacgcgccactcctcagatc
gtagagcaaatcattcaatatgcgagagagcgtaaaggcgtgatgatctttgctgcaaca
gttcgacatgctcaagaaattcacggcctgctgccagaaggcgaaaccgccatcgtcatt
ggtgacactccaacgccagagcgcgatgcgattattcaagctttcaaaaatcgcgaaatc
aaatacttggtgaatgtctctgtgttaaccaccggatttgacgcgcctcatgtggatttg
attgccatcttgcgccccactgagtcggtcagcttatatcaacaaattgttggacgaggt
ttgcgtttatcggaaggtaaaaatgaatgtctggtactcgattacgcgggtaacagctac
gatttgtatcagccagaagtgggagatccaaaacccgactccaccagcgagatcattact
attccttgccctgcttgcggatttaacaacaatttctggggtaaattggacagcaatggc
tttttactcgaacactttggccgacgctgccaaggttactttgaagatgaagacacgggc
gaacgcgaacattgtggctaccgttttcgtgccaaatattgcggcgaatgtggcgcagat
aatgatattgccgctcgtatatgccatgaatgtgatgcaacattggtcgacccagataag
aaactgaaagaagcactgaatttgaaagacgcactgatcttcgagtgcacagaaatggac
ttgtccgtgttcaaatcaaatgacggcaaatcacagctcaaagtcacgtattcgggggaa
ccataccaaggcgaaggtcatgcgttagttcatgagttttggtcattaaacaccaagaaa
cagaagcaaacttttaaagaccagtttgtgcgccctcaccttgccgataaacatcgcccg
tttgaagaagcatcgcctacacgagtcgtcgctaatcaacaccgtttccgtttaccacag
tttgtcattgccagaaagtctgggcgcttttggaagttgcgcgacaagatttttgaagat
gaacttaaataa
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