Vibrio parahaemolyticus BB22OP: VPBB_0928
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Entry
VPBB_0928 CDS
T02409
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VPBB_0928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_0928
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VPBB_0928
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VPBB_0928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGB09430
LinkDB
All DBs
Position
1:complement(1018499..1021960)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPTERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIVPVSTVLQRQS
PRDFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEAAVDTFLNDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFAHFKQLPQAQLSLEKVVKRAGRQNLAVQTLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVQESLYHAL
ESDHRFTLILGSAEHGFIHDELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPSQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ETAPLHKLGGEAWSKARRKAAEKVRDVAAELLDVYAKRELKPGFKFALDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVREREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRIPALLPDDYI
PDVNTRLSMYKRIASVSDSDELSELKVELIDRFGLLPDAAKNLLAVSELKFAAGSIKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLADRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcaacgatactttccgtcaccaatccaactgaacgtggcgacaaaaaacaa
cttggcaacttacccggtgcagcgctgccactcgccattgccgaactggccaagcagcat
tcaagtcactcactactggttgtgccagatccgcagatcgcgttgaaactgcaagcagaa
atcgaacagtttaccgaccaaccggtaagccttttccctgattgggaaacgttgccatac
gacaatttttctccacaccaagagatcatttctgaccgtattgctcgcctataccaactg
ccaaatcaacgtggcggcgtcactatcgtgccagtcagcactgttcttcagcgccaatct
ccgcgagattttttgttacagcacacactaatggtcaaaacaggcgataatttctcgcta
gaaaacctgagagtgcaattagagaactcgggttaccgtcatgtagaccaagtgtttggg
ccgggtgaatacgcgagccgaggttcgattctcgacttattcccaatgggcagtgcagat
ccttaccgtattgactttttcgatgatgaaatcgacaccattcgcactttcgatccggaa
aaccagcgttctatcgaagatattcagcaaatccaattgctgcctgcgcatgaattccca
acgacgaaagaagcgattgaagatttccgtactcgttggcgcacccagtttgaggcgaga
cgcgagccagaatccatctacatgcaagtcaccaaaggaacgtggccggcaggcattgaa
tactggcaaccactgttcttcgaccataccgaaaccctgttcgactacttacctgaagat
tcgcagctgatcacatacggcgacattgaagcagccgtcgacacattcttaaatgacgtc
gagtatcgctacgatcaaaagaaaattgatcctctacgtccacttcttgccccacacgat
ttgtggctcaagaaagacgaattgtttgcacacttcaaacaacttcctcaggcacagctc
agcctagagaaagtagtgaaacgtgcgggccgccaaaacttagcggtacaaacactggca
gaacttggcgttcaacagcaaaacaaagagccattgtctcgtctgcgccaattcagcgaa
caatttacgggaaaaatcattttttccgtggaatcagaaggtcgacgcgaagccctgact
gagcttctgcaaggcatcaaagttcgcccagtggtgcaagaatcgctgtatcacgcttta
gagtcagaccaccgtttcacgttgattcttggttcagcagaacacggctttattcatgac
gagctgaatttcgcgctgatatgcgaaagtgacttgcttggcgatcgcgtaattcaacgc
cgtcgcaaagacaaaaaagccgtcaacagtgacactgttattcgccaccttgccgaactg
aaaccaagccaacctgttgttcatattgaccacggcatcggccgctacatcggtctgcaa
acccttgaagcggggggaatgaaaaccgagtatgtgacgcttgaatatcaaaacgacgcc
aaactttatgttcccgtttcctcgctaaacttgatcagccgttactctggcggcgctgaa
gaaacggctcctctgcacaaacttggcggtgaagcgtggtcgaaagcacgtcgaaaagca
gctgagaaagtacgcgatgttgcagcagagctacttgatgtatacgcgaagcgtgagcta
aaaccgggctttaaatttgccttggatcgtggccaatacgcgaccttcaaggcaacattc
ccgtttgaagaaaccgatgatcaagccatggcaatcaacgcggtactttccgatatgtgc
caagcaaaagccatggatcgcttggtgtgtggtgacgttggctttggtaaaacagaagtt
gccatgcgtgcggcctttgttgctacggacaacagcaaacaagttgccgtactcgtgcca
acaaccctgcttgctcagcagcattttgaaaacttccgcgaccgcttcgcgaacttgcca
atccgagtcgaggtgctttctcgctttaaatcagccaaagagcaaaaagtgattttgcaa
gatgtggcggatggcaaagttgatatcgtcgtcggtacgcacaaattgctctccagcgac
ataaaattcaaagatttgggtttgttgatcgtcgacgaagagcatcgcttcggtgttcgt
caaaaagagaaagtcaaagcgatgcgcgccgatgtggacattcttaccctaacggcaacg
ccgattcctcgtacgctgaacatggcaatgagtggtatgcgtgatttgtcgatcatcgcc
acaccaccagcacgccgtttagctatcaagacatttgttcgtgaacgtgaagagtccgtg
gtgcgagaagccgtactgcgtgaaattatgcgtggtggtcaggtttacttcctacacaat
caggtagaaaccattgaaaaaacggcagaagacttacaaaaactcattccagaagcccgt
attaccgtggcacatggccaaatgcgtgaacgcgaactagaacgcatcatgaatgatttc
taccaccagcgctttaacgtgttggtgtgtaccaccatcattgaaacgggtatcgacgtt
ccgacggccaacacaatcattatggatcgtgctgacaaccttggcttggcgcaactgcat
caattgcgtggccgtgttggtcgctctcaccatcaagcttacgcttatttgttaacgcca
catccaaaagcaatgaccaaagatgccattaaacgtctcgatgccattgcttcactggaa
gacttaggcgcgggctttactctggcaacgcacgatttggaaattcgtggcgctggtgaa
ctgcttggtgacgaacaaagtggtcaaattcaatcggttggttttacactgtatatggaa
atgcttgaacaagcagtcgaagcgttgaaagaaggtaaagagccatcattggatgatctg
cttcgtgaacaaacagaagtggaactgagaatccctgcgctactgcctgatgattacatt
ccagacgtcaatacgcgtctgtcgatgtacaaacgaattgcgagtgtgagcgacagcgat
gagctatccgaattaaaagttgagctgatcgaccgctttggcttacttcctgatgccgcg
aagaacttgctggctgtctcagaattgaaatttgccgcaggtagtattaaagcgaagaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggcggaccgacgtaaacgcattcagtttgtacaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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