Vibrio parahaemolyticus BB22OP: VPBB_1138
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Entry
VPBB_1138 CDS
T02409
Name
(GenBank) DNA or RNA helicase of superfamily II
KO
K19789
DNA repair protein RadD
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_1138
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
VPBB_1138
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
AAA_22
DZR
zf-tcix
ERCC3_RAD25_C
AAA_30
FAD_binding_4
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AGB09633
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Position
1:complement(1254577..1256328)
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AA seq
583 aa
AA seq
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MYTLRPYQADSVKAVIHYFRKHSTPAVIVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHAKYEGYGLKGAIFSAGLGRKETDQQVVFASVQSVVRNLDSFKNQFSLLVIDECHR
VPDDKNSSYQKVITHLRELNPGIKVLGLTATPYRLGMGWIYQYHTRGQVRTEESRFFRDC
IFELPIRYLLDENFLTPARMMDAPVLSYDFSQLKPANTGRYKEAEMDMVIDKAKRATPQI
VEQIIQYARERKGVMIFAATVRHAQEIHGLLPEGETAIVIGDTPTPERDAIIQAFKNREI
KYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSEGKNECLVLDYAGNSY
DLYQPEVGDPKPDSTSEIITIPCPACGFNNNFWGKLDSNGFLLEHFGRRCQGYFEDEDTG
EREHCGYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALIFECTEMD
LSVFKSNDGKSQLKVTYSGEPYQGEGHALVHEFWSLNTKKQKQTFKDQFVRPHLADKHRP
FEEASPTRVVANQHRFRLPQFVIARKSGRFWKLRDKIFEDELK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtacacacttcgcccatatcaagctgactctgttaaagccgttattcattactttcgc
aaacattccacccccgcagtgatcgtactaccaactggtgcggggaaaagcttagttatt
gcagaactggcacgccttgccaaagggcgtgtgttggttttggcccacgtaaaagagctg
gtggaacaaaaccacgcgaaatatgaaggctacggtttgaaaggcgccatattttcggca
ggattaggaagaaaagaaaccgaccaacaagtggtgtttgcctcggtgcaatcggtagtg
cgcaatttggactcattcaaaaaccagttctcacttctggttatcgatgaatgtcaccgt
gtgccagacgataaaaacagcagctatcaaaaagtgattacgcaccttcgagagctcaac
cctggcatcaaagttttgggcttaacggcaacaccgtatcgtttaggaatgggatggatt
tatcaataccacacccgaggtcaagtacgcaccgaagagtcgcgatttttccgcgactgc
attttcgaactgcctatccgttacttgctggacgaaaacttcctcacccccgcacgcatg
atggatgcgcccgttttgtcttacgacttctcgcagctgaaacccgctaataccggacgc
tacaaagaagcggaaatggacatggttatcgacaaagccaaacgcgccactcctcagatc
gtagagcaaatcattcaatacgcgagagagcgtaaaggcgtgatgatctttgctgcaaca
gttcgacatgctcaagaaattcacggcctgctgccagaaggcgaaaccgccatcgtcatt
ggtgacactccaacgccagagcgcgatgcgatcattcaagctttcaaaaatcgtgaaatc
aaatacttggtgaatgtctctgtgttaaccaccggatttgacgcgcctcatgtagatttg
attgccatcttgcgccccactgagtcggtcagcttatatcaacaaattgttggacgaggt
ttgcgtttatcggaaggtaaaaatgaatgtctggtactcgattacgcgggtaacagctac
gatttgtatcagccagaagtgggagatccaaaacccgactccaccagcgagatcattact
attccttgccccgcttgcggatttaacaacaatttctggggtaaattggacagcaatggc
tttttactcgaacactttggccgacgctgccaaggttactttgaagatgaagacacgggc
gaacgcgaacattgtggctaccgttttcgtgccaaatattgcggcgaatgtggcgcagat
aatgatattgccgctcgtatatgccatgaatgtgatgcaacattggtcgacccagataag
aaactaaaagaagcactgaatttgaaagacgcactgatcttcgagtgcacagaaatggac
ttgtccgtgttcaaatcaaatgacggcaaatcacagctcaaagtcacgtattcaggggaa
ccataccaaggcgaaggtcatgcgttagttcatgagttttggtcattaaacaccaagaaa
cagaagcaaacttttaaagaccagtttgtgcgccctcaccttgccgataaacatcgcccg
tttgaagaagcatcgcctacacgagtcgtcgctaatcaacaccgtttccgtttaccgcag
tttgtcattgccagaaagtctgggcgcttttggaagttgcgcgacaagatttttgaagat
gaacttaaataa
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