Vicugna pacos (alpaca): 102527671
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Entry
102527671 CDS
T08098
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03030
DNA replication
vpc03410
Base excision repair
vpc03420
Nucleotide excision repair
vpc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102527671 (LIG1)
03410 Base excision repair
102527671 (LIG1)
03420 Nucleotide excision repair
102527671 (LIG1)
03430 Mismatch repair
102527671 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpc03032
]
102527671 (LIG1)
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102527671 (LIG1)
Enzymes [BR:
vpc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102527671 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102527671 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102527671 (LIG1)
DNA replication proteins [BR:
vpc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102527671 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102527671 (LIG1)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102527671 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102527671 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102527671 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
102527671
NCBI-ProteinID:
XP_015098418
UniProt:
A0A6J0ARM4
LinkDB
All DBs
Position
11
AA seq
916 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEETSNSTRETESPPKAALKERNRMVPEGDSPVKRPGRKVA
RVLGSEGEEEEEAPSPLKGQKPAPDSPQNSPPHPVTLPKSPSLSNTSPAVLSPPAIPKRR
TARKQVPKRTFLEVLEEQSKDKVTEAKKKKEDKAELETPLESLTEPEVGKKEEADAKEQP
TTPPRPRETPEAEPPTESVCKPEMATKQGPQEDGQTQPPRPAAKTLSSFFSPRKPAVKKE
AEEEGPGSVRKEAAKGHLDPPSYNPAKNNYHPIEDACWKPGQKVPYLAVARTFEKIEEVS
ARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQATG
RQLESVRAEATEKGDVGLVAESSRSTQRLMLPPPALTAAGVFAKFRDIAQLAGNASTTKK
MDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDA
GKGKTAEARKTWLEEQGMMLKQTFCEVPDLDRIVPVLLAHGLEQLPEHCRLSPGIPLKPM
LAHPTRGVGEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVRIFSRNQEDNTGRYPDVIS
RVPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLI
YLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLM
VKTLDTDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASY
DEESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRPYVRADGAVAPDHWLDPSAVWE
VKCADLSLSPIYPAARGLVDGEKGISLRFPRFLRVREDKKPEQATTSAQVACLYRKQSQI
QNQHGAEPDSEPEDFY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccagcccaagaaagaaggcaaagtgaagaagcca
gaggagacatccaacagcaccagagaaacagagtcccctccaaaggcggctctgaaagag
cggaatagaatggtgcctgagggcgactctccagtgaagaggccagggaggaaggtggcc
cgggtcttgggcagcgagggggaggaggaggaggaagccccctcacccctcaaaggccag
aagcctgcaccagactctccacagaactcccctccccatcctgtcacacttcccaagagc
ccttccctctccaacacctctccagcagtcctctccccaccagcgatcccaaagcgtcgc
acagcccggaagcaggttcctaaacggacatttctggaagtcctggaagagcagagcaag
gacaaggtcacagaagccaagaagaagaaggaggacaaagcagaactagagaccccattg
gaaagcctcacggagcctgaagtgggcaaaaaggaggaggcagatgcgaaggagcagccc
acgacgccccccagaccccgagagacccccgaagccgagcccccgacagaaagtgtttgc
aagcctgagatggcaacgaagcagggaccacaggaggacggccagacacagcctccccgc
ccagctgccaagacactcagcagtttcttctccccccgaaagccggcagtcaaaaaggaa
gctgaagaagagggacctggctctgtaagaaaggaggcagccaagggacacctggaccca
cccagctacaacccggccaagaacaactaccatcccattgaagacgcctgctggaagcca
ggccagaaggtcccttacctggccgtggcccggacctttgagaagatcgaggaggtttct
gctcggctccgcatggtggagacactgagcaacttgctgcgctccgtggtggccctgtca
cctccagacctcctccccgtcctctacctcagcctcaaccgcctggggccgccccagcag
ggcctggagctgggcattggtgacggcatccttctcaaggcagtggcccaggccacaggt
cggcagctggagtcggtccgggctgaggccacagagaagggcgacgtggggctggtggcc
gagagcagccgcagcacgcagagactcatgctgcccccgcccgccctgaccgccgccggc
gtcttcgccaagttccgggacatcgcccagctggccggcaatgcatccacaaccaagaag
atggacatcatcaaaggcctctttgttgcctgccgccactcagaagctcggttcatcgcc
agagccctgagcggacgcctgcgcctcggactggcagagcagtcagtgctggccgccctc
gcccaggccgtgagccttacaccccctggccaagaattccccccggccgtggtggatgct
gggaagggcaagacagcagaggccagaaagacgtggctggaggagcaaggcatgatgctg
aaacagacgttctgcgaggtgccagatctggaccggatcgtccctgtgctgctggcgcat
ggcctggagcagctcccggagcactgcaggctgagcccagggatccccctgaaaccaatg
ttggcccaccccacccggggcgtcggcgaggtcctgaaacgcttcgaggaggcagctttc
acctgcgagtacaaatacgatggacagagggcccagatccaccttctggaaggtggggag
gtgaggatcttcagcaggaatcaggaggacaacacgggaaggtaccccgacgtcatcagc
cgcgtcccgaagattaaactcccatcagtcacatccttcattctggacactgaagccgtg
gcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgc
aaggaggtggacgcagcggagatccaggtgcaggtgtgtttgtacgccttcgacctcatc
tacctcaatggagagtccctggtacgtgagcccctctcccgacgccgccagctgctccgg
gagaacttcgtggagaccgagggcgagtttgtcttcgccacctccctggacaccaaggac
acggagcagatcgctgagttcctggagcagtcagtgaaagactcatgcgaggggctgatg
gtgaagaccctggacaccgatgccacctacgagatcgccaagagatcacacaactggctc
aagctgaagaaggactaccttgatggcgtgggcgacaccctggacctcgtggtgatcggc
gcctacctgggccggggaaagcgggccggccggtacgggggcttcttgctggcctcctat
gacgaggagagcgaggagctgcaggccatatgcaagctggggactggcttcagtgacgaa
gagctggaagagcatcaccagagcctccaggccctggtgctgcccgccccgcgcccctac
gtccgggcagatggcgccgtggcccccgaccactggctggaccccagcgccgtgtgggag
gtcaagtgcgctgacctctccctctcccccatctaccccgctgcccggggcctggtggac
ggcgagaagggcatctccctgcgcttcccgcggtttctgcgcgtccgggaggacaagaag
ccggagcaggccaccaccagtgcgcaggtggcctgtctgtacaggaagcaaagtcagatt
cagaaccagcacggcgcagagccggactccgagccagaggatttctactag
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