Vicugna pacos (alpaca): 102530506
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Entry
102530506 CDS
T08098
Symbol
RGPD4
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 4 isoform X2
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03013
Nucleocytoplasmic transport
vpc03250
Viral life cycle - HIV-1
vpc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102530506 (RGPD4)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102530506 (RGPD4)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102530506 (RGPD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102530506 (RGPD4)
03110 Chaperones and folding catalysts [BR:
vpc03110
]
102530506 (RGPD4)
04121 Ubiquitin system [BR:
vpc04121
]
102530506 (RGPD4)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102530506 (RGPD4)
Chaperones and folding catalysts [BR:
vpc03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
102530506 (RGPD4)
Ubiquitin system [BR:
vpc04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
102530506 (RGPD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ran_BP1
zf-RanBP
IR1-M
Pro_isomerase
WH1
TPR_1
TPR_2
TPR_14
TPR_16
TPR_8
TPR_11
Motif
Other DBs
NCBI-GeneID:
102530506
NCBI-ProteinID:
XP_015104338
UniProt:
A0A6J0AWB9
LinkDB
All DBs
Position
28
AA seq
3069 aa
AA seq
DB search
MKGFYFAKLYYEAKEYDLAKKYISTYINVQERDPKAHRFLGLLYEVEENIDKAVECYKRS
VELNPTQKDLVLKIAELLCKNDVSDGRAKYWVERAAKLFPGSPAIYKLKEQLLDCKGEDG
WNKLFDLIQSELHARPDDIHMNIRLVELYRSNGRLRDAVTHCRQVERSAALRSSLEWNAC
AVQTLKEYLESSQCLEPDKSNWQSTSKDLLLAYANLMLLTLSARDVQESRELLESFDSAL
QSVKSCVGANDELSVTFVEVRGHLYMHAGSLLLKMGQHSTVQWRALAELAALCYLVAFQV
PRPKIKLIKGDAGQNLLEMMAYDRLSQSGHMLLNLSRDKQDFLKEVVESFANESGQSALY
DALFSSRSPKDRSFLGSDVIGNLDVQAPEPEDLARCDVGAVRAHGGSLQHLTWLGLQWNS
LPSLPVIRKWLKQLFHHLPQETSRLETNAPESICTLDLEVFLLGVIYTSHLQLKEKCNSH
YSFYQPLCLPLPVCKQLCTERQKAWWDAVCNLIHRKAIPGTSAKLRLLVQHDINTLRGQE
KHGLQPALLVHWAQCLQKTGSGLNSFYDQREYIGRSVHYWKKVLPLLKIIKKKSSIPEPT
DPLFKHFHSADIQASEIGEYEEEAHITFAILDAVNGNIEDAMTAFESINNVVSYWNLALI
FHRKAEDIENDMLSPEEQEECKNCLRKARDYLIKILDDSDSSLSVVQKLPVPLESVKEML
NSVMQELDDYSEGGPFYKNGSLRNADSEMKHSTPSPTKYSLSPSKTYKYSPRTPPRWAED
QNSLLKMICQQVEAIKKEMQELRLNSSNSGSPHRWPAENYGPDSVPDGHQGPQNFHGAPL
TVATTGPSVYYSQSPAYNSQYLLRPAANVTPTKGPVYGMNRLPPQQHIYTYAQQMHTPPV
QSSSACMFSQDMYGPPLRFESPATGILSPRSDDYFNYNVQQTNTNPPLPEPGYFTKPPVA
AHASRSAESKVIEFGKPSFVQPVPGEGIRPSLAAPAHPAQSTSFKFNSNFKSNDGDFTFS
SPQVVAQPPSTTYNNSESLLGLLTSDKPLQGDSYSGPKAAQTIGPRNTFNFGSKNVPEIS
FTENMGPNQQKNSGFRRSEETFTFHSPGKSVFGAPAAEPANRSPEADGGSAHGEDDEDGP
HFEPVVPLPDKIEVKTGEEDEEEYFCNRAKLFRFDGGSREWKERGVGNVKILRHKMSGKI
RLLMRREQVLKICANHYISPDMALAPMAGSDRSFVWCALDYADESPKPEQLAIRFKTPEE
AALFKCKFEEAQSLLKASGANRATTTSQAARTVKEPTSHDSTDICKPDAGNMNFEFQVAK
KEGSWWHCNSCSLRNAATAKKCVSCQNLNPSSKDLLGPPLVETVSTPKTSSESAPERFAL
MTPKKEGHWDCSVCLVRNEPTVSRCNACQNTKSASKSESPFVQQPSFKFGQGDLPKSASS
DFRSVFSIKEGQWDCSICLVPNEGSSTRCVACQNPRKQSVPASAAPAPASFKFGSSETSK
APESGFEGVFTKKEGQLGCSLCLVQNEAGAAQCVACQNARRQNPPTPAAPAPAEVSKAPK
SGLEGLFPKKEGQWDCSICLVPNEGSSTRCVACQNPRKQSVPASAAPTPASFKFGSSETS
KAPESGLEEEAFPKKEGQWDCGGCSMRNESSSLKCLSCDASKPAHKPVAEEPSAFTLGST
AKVNDSSGSQVGTGFKNNFSEKAFKYGNAEQGFKFGHVDQENVPSFTFQGSSSTESRSTK
EGFSFSVPVPADGFKFGIQETGNQEENKSEKPIESDSGRQAQEAGGQKDGAAVGFGQAGS
TLTFADLAKSTSGEGFQFGKKDPNFKGFSGAGEKLFSSQSGKMADQADTCADLEKDDDKT
EDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLKILKN
EVNGKLRMLMRREQVLKVCANHWITTTMHLKPLSGSDRAWMWLASDFSDGNAKLEQLAAK
FKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLT
SDQMKVTDQESKSPGAGAASAEEASSLPNPEHSGPALEWDSYDLREDALDGGGSVHASPL
ASSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGASVGTDEDSDVTQEEERDGQ
HFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDRDAGQWKERGIGDIKILQNYDSRQG
RVVMRRDQVLKLCANHRITPDMTLQSMKGTERVWVWTACDFADGERKVEHLAVRFKLQDV
ADSFKKIFDEAKIAQEKDLLITPHVSRSATPRESPCGKIAVAVLEETTRERTDLVQGDVV
ADTTSEVGVSSTSETTKAVVSPPKFVFGSESVKSIFSSEKSKPFAFGNSSATGSLFGFSF
NAPLKNSSSETSSAQSGSERSVGPGGGELSQSSDPGPAPDGSARNLTPVLPKEESTSGHT
FKTPERAEEKKKPEDPPLDDDVLVVYELTPTPEQRALASKLQLPPTFFCYKNRPDYVSEE
EEDDEDFDTAVKKLNGKLYLDDSEKCRPLEENLPGNEKECVIVWEKKPTVEEKAKADTLK
LPPTFFCGACSDTDEDNGNGEDFQSELQKVQEAQKSQSEEATSRAESVCAGGSEVTVPHV
CESQEPDFTTRSASSPPISSGTVDKPVDLSTRKEDDAESAGQVESKTLSFGFGSSTGLSF
ADLASSNSGDFAFGSKDKNFQWANTGAAVFGAQAASKAGEDEDGSDEEVVPNEDVHFEPI
VSLPEVEVKSGEEDEEILFKERAKLYRWDREVSQWKERGVGDIKILWHTMKNYYRVLMRR
DQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEMADCFKK
KFEECQQNLLKLQKGQVSLAAELSKETNPVVFFDVCAEDEPLGRITIELFANIVPQTAEN
FRALCTGEKGFGFKNSIFHRVIPGFICQGGDITKHDGTGGRSIYGDKFEDENFKVKHTGP
GLLSMANRGRDTNNSQFFITLKKAENLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSQR
IIITECGQI
NT seq
9210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggattctattttgcaaagctgtattatgaagctaaagaatatgatcttgctaaa
aaatatatatctacatatattaacgtgcaagaaagggatcccaaagctcacagatttctt
ggtcttctttatgaagtggaggaaaacatagacaaagctgttgaatgttacaagcgttca
gtggaattaaacccaacacaaaaagatcttgtgttgaagattgcagaattgctctgtaaa
aacgatgttagtgatggcagagcgaaatactgggttgaaagggcagctaaactgtttcca
ggaagtcctgcaatttacaagctaaaggaacagcttttagactgtaaaggtgaagatgga
tggaataaactcttcgacttgattcagtcagaacttcatgcgaggcctgatgacatccac
atgaacatccgactagtggagctgtaccgctccaacgggaggctgagggatgccgtgacc
cactgccgccaggtggagaggagtgcagccttgcgctccagtttagagtggaatgcttgc
gctgtgcagaccctcaaggaatatctggaatcttctcagtgtctggagcctgataaaagt
aactggcaatcaaccagcaaggacttacttctagcctatgctaacctcatgctgcttacg
ctctctgctagagatgtgcaagaaagcagagaattactggaaagttttgacagtgctctt
cagtctgtgaagtcttgtgtgggtgcgaacgacgagctctcggtgacgtttgtggaagtg
cggggacacctgtacatgcacgctggctctctgctcctgaagatgggccagcacagcact
gtgcagtggcgggcactcgcagagctggcggccctgtgctacctcgtggcattccaggtt
ccaagaccaaagattaaattaataaaaggagacgctggacagaatctgctggaaatgatg
gcctatgatcgtctgagccaatcagggcatatgctgctaaacttaagtcgtgacaagcaa
gattttttaaaagaggttgtagaatcctttgccaatgaaagtgggcagtctgctttatat
gacgctctgttttccagtcggtcacctaaggatagatctttccttggtagcgatgttatt
ggaaaccttgatgtacaagcaccggagcctgaagatttggctcgatgtgacgttggtgcg
gttcgagcacacggtggtagccttcagcaccttacttggcttggcttacagtggaattca
ttgccttccttacctgtaattcgaaaatggctaaaacagctttttcatcatttgccccag
gaaacctcaaggcttgaaacaaacgcacctgaatcaatatgcactttagatctggaagta
tttctacttggagtaatatataccagccacttacagttaaaagagaagtgtaattctcac
tacagcttctatcagcctctgtgcttgcctcttcctgtgtgtaaacagctttgcacggaa
agacagaaagcttggtgggatgcggtgtgtaatctcattcatagaaaagcaatacctgga
acctcagcaaaattgcggcttctagttcagcacgacataaacactctaaggggccaggaa
aaacatggccttcagcctgctctgcttgtgcactgggcacagtgccttcagaaaacgggc
agtggccttaattctttttatgatcaacgggaatacataggcagaagtgttcattattgg
aagaaggttttgccattgttgaagataatcaaaaagaagagcagtattcctgaacctact
gaccctctgttcaagcattttcacagtgcagacatccaggcatctgaaattggtgaatat
gaagaggaagcacacataacttttgccatattggatgcagttaatggaaacatagaagat
gctatgactgcttttgaatctattaataacgtcgtctcttactggaatcttgcactgatt
tttcacaggaaagcagaagacattgaaaatgatatgctttctccagaagaacaagaagaa
tgcaaaaactgcctgagaaaggctagagactacctgatcaagatcctggacgacagcgac
tccagcctctcggtggttcagaagttgcctgtgcccctggaatctgtgaaggagatgctt
aattccgtcatgcaggaactcgatgactacagtgaaggaggtcctttttataaaaatggt
tctttgcgaaatgcagattcagaaatgaaacattcgacaccatctcccacaaaatattct
ctgtcaccaagtaaaacttacaagtattctcccagaacaccaccacgatgggcagaagat
caaaattctttattgaaaatgatctgccagcaggtggaggccattaagaaagaaatgcag
gagttgagactgaacagcagtaactcggggtcccctcatcgctggcctgcagagaactat
gggccagactcagtgcctgatggacatcaggggccacaaaattttcacggggcccctctg
acggttgcaactactggcccttcagtatattatagtcagtcaccagcatataattcccag
tatcttctcagaccagcagctaatgttactcccacaaagggaccagtttatggcatgaat
aggctgccgccacagcagcacatctacacctacgctcagcagatgcacacccccccagtg
cagagctcatctgcctgtatgttctcccaggacatgtatggtcccccgctgcgttttgag
tctcctgcaacaggaattctctcacccaggagtgacgattactttaattacaacgttcag
cagacaaacacaaatccacctctgccggaaccagggtatttcacaaaacctccagttgca
gctcatgcttcaagatctgcagaatctaaggttatagaatttgggaaacccagttttgtt
cagcctgtaccaggcgaaggaataaggccgtctctggcagcacctgcacatccagcacag
tccacttcttttaaatttaactcaaatttcaaatcaaatgatggtgacttcacattttcc
tcaccgcaggttgtggcacagcccccttctacgacttacaataatagtgaaagcctttta
ggtctcctgacttcagataagcctttgcaaggagacagctacagtggaccaaaagccgct
cagaccattggacctcgaaatacattcaatttcggaagcaaaaatgtgcctgaaatttca
tttactgaaaacatgggcccaaatcagcaaaagaattctggttttcggcgcagtgaggaa
acgtttactttccacagtccagggaagtcagtgtttggagcacctgccgcagagccggcc
aacaggagtcccgaagcagacggtgggagtgcccatggagaggacgatgaggatggtccc
cactttgagccggtggtgcctctccccgataagattgaagtgaagactggcgaggaggac
gaggaagagtatttctgcaatcgtgcaaagttgttccgttttgatggaggatccagagag
tggaaggagcgtggagttggcaatgtaaagatcctgagacacaaaatgtctgggaagatc
cgccttctgatgaggcgcgagcaagtgctgaagatctgtgcaaatcactacatcagccca
gacatggccctggcgcccatggcgggctcagaccggtcctttgtgtggtgtgctctggac
tacgcagacgagtcgcccaaaccagagcagctcgctatcaggttcaagacgcctgaggaa
gcagcactttttaagtgcaagtttgaagaggcccagagcctgttgaaagcctctggagca
aacagagccacaaccacaagtcaggctgcgagaactgtaaaagaacccacaagtcacgat
agtacagatatttgcaaacctgatgctggaaacatgaattttgaatttcaagttgcaaag
aaagaagggtcttggtggcattgtaacagctgctcgttaagaaatgctgcaactgctaag
aagtgtgtatcgtgccaaaacctcaacccaagcagtaaagacctccttggcccaccatta
gttgaaactgtttccactcctaaaactagttcagaaagtgctccagaaagatttgcattg
atgacgccaaagaaagaaggtcactgggattgtagtgtctgtttagttagaaatgaaccc
actgtgtctagatgcaatgcatgccagaatacaaagtctgctagcaaaagtgaatctcca
tttgttcagcaaccttcctttaaatttggccaaggagatcttcctaagtctgccagcagt
gatttcagatctgttttttcaataaaagaagggcagtgggattgcagcatttgcttggtg
ccaaatgaaggaagctctaccagatgtgtggcttgtcagaatcccagaaaacagagtgta
cctgcttctgctgccccagctcctgcctcttttaagtttggttcttcagagacaagcaag
gctccagagagtggatttgaaggagttttcaccaagaaggagggacagttgggttgcagt
ttgtgcttagtgcagaatgaggcaggcgcggcccagtgtgtggcctgtcagaatgcacgg
agacagaatccacccactcccgctgcccctgcccctgccgaggtgagcaaggctccaaag
agtgggcttgaagggctgttccccaagaaggaagggcagtgggattgcagcatttgcttg
gtgccaaatgaaggaagctctaccagatgtgtggcttgtcagaatcccagaaaacagagt
gtacctgcttctgctgccccaactcctgcctcttttaagtttggttcttcagagacaagc
aaggctccagagagtggacttgaagaagaggcattccccaagaaggaaggacagtgggat
tgtggtggttgctctatgcgaaatgagagttcttccttaaaatgcttgtcttgtgatgcc
tctaaaccagcccataaacctgttgcagaagaaccttcagctttcacattgggctcaaca
gctaaggtaaacgactcttctggaagtcaggtgggaacaggatttaaaaataacttttca
gaaaaagcctttaaatatggcaacgcagaacaaggatttaaatttgggcatgtggatcaa
gaaaatgtaccttcgtttacatttcagggttcttccagcacagagtctaggtcaacaaaa
gaaggatttagtttttctgtccccgtgcctgctgatgggtttaaattcggcattcaggag
acgggaaatcaggaggagaacaagagtgaaaagcccattgaaagcgactctggtcgtcag
gctcaggaagcaggcggccagaaggacggggctgccgtgggctttggccaggctggcagc
actttgacctttgcagaccttgcgaagtcaacttcaggagaaggctttcagtttggcaaa
aaagaccctaatttcaagggattttcgggtgctggagagaaattattctcatcacaaagt
ggtaagatggctgatcaggcagacacctgtgctgaccttgagaaagacgatgataagacg
gaggacagtgatgacatccactttgaacctgttgtccagatgcctgagaaggtggagctc
gtcacgggggaggaggatgagaaagttctttactcacagcgtgtgaaattattcaggttt
gatgccgagataagtcagtggaaagaaaggggtttggggaacttaaaaattctcaaaaat
gaagtcaacggcaaactgagaatgctgatgcggagagagcaggtgctgaaagtgtgtgcc
aaccactggatcaccaccaccatgcacctgaagcccctctccgggtcggacagggcctgg
atgtggctggctagtgacttttctgatggcaatgccaaactggagcagctggcagcaaaa
ttcaagacccccgagctggctgaggagttcaagcagaagtttgaggaatgccagcgactt
ctgttagacataccactgcagacgccccataaactcgtggacactggccgagccgccaag
ttaatacagagggctgaagagatgaagagtgggctgaaagacttcaaaacgtttctgacc
agtgatcagatgaaagtcactgaccaagagagtaagagcccaggggcaggcgctgcaagc
gctgaggaggccagcagcctgccgaatccggagcacagcgggcctgccctggagtgggac
agctacgacctgcgggaggacgccctggacggcggcggctcggtgcacgcctcgcccctg
gccagcagccccgtgaggaaaaatctcttccgctttggtgagtcaaccacagggttcaac
tttagttttaaatctgctttgagtccatctaagtctcctgccaagttgaatcagagtggg
gcctccgtgggcaccgatgaagactcggacgtcacccaggaggaggagagggacgggcag
cacttcgagcccgtggtccctctgccggatctcgtcgaggtgtccagcggtgaggagaac
gagcaggtggtgttcagtcacagggcaaagctctacaggtacgacagagacgcggggcag
tggaaggagaggggcatcggcgacataaagatcctgcaaaactacgacagcaggcagggc
cgcgtggtgatgcggagggatcaagtgttgaaactctgcgccaaccacagaataactcca
gacatgactttgcagagcatgaaggggacagagcgagtgtgggtgtggactgcgtgtgac
tttgcagacggagaaagaaaggtggaacacttagccgtccgctttaaattacaggatgtt
gcagattcgtttaagaaaatatttgatgaagcaaaaatagcccaagaaaaagatcttttg
ataacacctcatgtttctcgttctgccactcccagagagtcaccgtgtggcaaaattgcc
gtggctgtgttggaagaaaccacgagggagcggacggatttggttcagggtgatgtcgtg
gctgatacgacctcagaagttggagtgtctagcacgtctgaaacaacaaaagcagtggtt
tcacctccaaaatttgtgtttggttctgagtctgttaagagcattttcagtagtgaaaaa
tcaaagccatttgcatttggcaatagttcagctactgggtccttgtttgggtttagtttt
aacgcacctttgaaaaacagcagtagtgaaaccagttcagcccagagtggatctgaaaga
agcgtggggccgggtggtggcgagttgtcgcagagctctgaccctggaccagctcctgac
ggcagtgccagaaacctcactcctgtgttaccgaaggaagagtccacaagcggtcacacg
ttcaaaacaccagaaagggcggaagagaagaaaaagccagaagaccctcccttggatgat
gatgtcctcgtggtgtatgagctgaccccgacccctgagcagagggctcttgcgagcaaa
ctgcagcttcctcccactttcttctgctataagaacaggccagactacgtcagtgaagag
gaggaggatgatgaagattttgacacagctgtcaagaaacttaatggaaaactgtatctg
gatgactcagaaaaatgtagaccactagaagaaaacctgccaggtaatgagaaagaatgt
gttattgtttgggaaaagaaaccaacagttgaagagaaggcaaaagcagacaccttaaaa
cttccacccacatttttctgtggagcctgcagtgacactgatgaggacaatggaaacggg
gaagacttccagtcggagcttcagaaagttcaggaagctcagaaatcccagagtgaggaa
gcaactagcagggctgagagtgtgtgtgcaggtgggagtgaagtgaccgtcccacacgtg
tgtgaatctcaagaacctgattttaccaccagatccgctagttcgccacctatttcttct
gggactgttgacaaacctgtggatttatctactagaaaggaagatgatgcagagtctgca
ggccaagtggaaagcaaaacactttcatttggatttggaagtagtacagggctgtcgttt
gcagacttggcttccagtaattctggggattttgcttttggttccaaagataaaaacttc
cagtgggcgaatactggggcagccgtgttcggagcgcaggcagccagtaaggccggcgag
gacgaggacggcagtgacgaagaggtggttcctaatgaagacgtccactttgagcccata
gtgtcgctgcccgaggtagaagtaaaatctggagaagaagatgaagaaattttatttaaa
gagagagccaaactttacaggtgggatcgagaggtcagtcagtggaaggagcgtggcgtt
ggagacataaagatcctgtggcacacgatgaagaactactaccgcgtcctcatgaggaga
gaccaggtcttcaaagtgtgcgcaaaccacgtcatcaccaaaaccatggaactgaaaccc
ttgaatgtttctaacaatgctttagtgtggactgcctcagattatgctgatggagaagcc
aaagtggaacagcttgcagtgagatttaaaactaaagaaatggccgattgttttaagaaa
aaatttgaagaatgtcaacagaatttactgaaactccagaaaggacaggtgtcattggca
gcagaattgtcaaaagagacaaaccctgtagtgtttttcgacgtttgtgcagaagatgaa
cctctaggacgtataaccatagaattgtttgcaaacattgttcctcaaactgctgagaac
ttcagagcactgtgcactggagagaagggctttggtttcaagaactccatttttcacaga
gtaattccaggttttatttgccaggggggagatatcaccaaacacgatggaactggagga
cggtccatttatggagataaatttgaagatgaaaattttaaggtgaaacatactggtcct
ggcttactatccatggccaatcgaggccgggataccaataattctcagtttttcataaca
ctgaaaaaagcagaaaatttggactttaagcatgtagtatttgggtttgttaaggatggc
atggatactgtgaaaaagattgaatcgtttggttctcctaaaggatctgttagtcaaaga
attatcatcacagaatgtggacagatataa
DBGET
integrated database retrieval system
