Vicugna pacos (alpaca): 102539587
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Entry
102539587 CDS
T08098
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03013
Nucleocytoplasmic transport
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102539587 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
102539587 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102539587 (THOC1)
03041 Spliceosome [BR:
vpc03041
]
102539587 (THOC1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102539587 (THOC1)
Spliceosome [BR:
vpc03041
]
Complex C
Other components
EJC/TREX
102539587 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102539587 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
102539587
NCBI-ProteinID:
XP_006205182
UniProt:
A0A6J3BLA6
LinkDB
All DBs
Position
24
AA seq
657 aa
AA seq
DB search
MSPTPPLFSLPEARTRFTKSTRDALNNKNIKPLLNTFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPARVVRKRAAPE
DFLGKGPSKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGDQIEVFASKLGEQWKILAPYLEMKDSEIR
QIECDSEDVKMRAKQLLVAWQDQEGAHATAENLINALNKSGLSDLAESLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacgccgccactcttcagtttgcccgaagcgcggacgcggtttacgaaatct
accagagatgccctgaacaacaaaaatatcaaaccattgttgaataccttcagccagtta
cctggcagtgaaaatgaaaaaaaatgtacccttgaccaagcttttagaggtgttctagaa
gaagaaattataaatcattcatcatgtgaaaacgttttagctattatttctcttgctatt
gggggagtaactgaaggtatctgtaccgcatccacaccttttgtactgttgggagatgtt
ttggattgtcttcccttggatcagtgtgacacaatattcacttttgtggaaaaaaatgtt
gccacttggaaatcaaatacattctattctgctgggaaaaattatttactacgtatgtgc
aatgatctcctacgaagattatcaaaatcgcagaacacagtcttctgtggacgaattcag
ctctttttggccaggcttttccctttatctgagaagtcaggccttaacttgcagagtcaa
tttaatctggaaaatgtcactgttttcaataccaatgaacaggaaagtacactgggtcag
aagcacactgaggacagagaagaaggaatggatgtagaagaaggtgaaatgggagatgat
gaagctccaacaacttgctccattccaattgattacaacctgtaccggaaattctggtca
cttcaggattactttaggaaccctgtgcaatgctatgagaagatttcatggaaaactttt
ctcaagtattctgaagaagttctagctgtttttaagagttataaattagatgatactcag
gcctcgaggaaaaagatggaagaattgaaaacaggaggagagcatgtgtattttgcaaaa
tttttaacaagtgaaaagttgatggatttacaactgagcgacagtaatttccgtcggcat
atcctgttgcagtatctcattttattccagtatctcaaggggcaggtcaaattcaaaagt
tcaaactatgttttaactgatgagcaatcactctggattgaagatactacaaaatcagtt
tatcaactactatctgaaaacccccccgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggctgcccgagttttgtg
aaagaaagaacatcggacaccaagccagcaagagtggtacggaagagagcagcgccagag
gactttctggggaaagggcccagcaagaaaattctgatgggaaatgaggagttaacaagg
ctctggaatctctgtcctgataatatggaagcctgtaaatcagagacaagggaatacatg
ccaacgttagaggaattctttgaagaagccattgaacaggcagaccctgaaaacatggtt
gaaaatgaatacaaggctgtgaacaattcaaactatggttggagggccctgcgactgtta
gctcggagaagccctcacttcttccagccaaccaaccagcagtttaaaagtttgccagag
tatctcgaaaacatggtaataaagctagccaaggaattaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaagaaaatgaaagt
cccgatgttcggagagacaaacctgtaacgggggatcaaatagaggtatttgccagcaaa
ctgggtgaacaatggaagattctggctccctacttagaaatgaaagactcagaaattaga
cagattgagtgtgacagtgaagacgtgaagatgagggcaaagcagctgctggtggcctgg
caggaccaggagggggcgcacgcaacggccgagaacctgatcaacgcgctcaacaagtct
gggctaagtgaccttgcagaaagtctaactaatgacaacgagaccaatagttag
DBGET
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