Vicugna pacos (alpaca): 102541024
Help
Entry
102541024 CDS
T08098
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102541024 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102541024 (LIG4)
Enzymes [BR:
vpc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102541024 (LIG4)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102541024 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
102541024
NCBI-ProteinID:
XP_006215589
UniProt:
A0A6I9IKV5
LinkDB
All DBs
Position
14
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGARA
DAGDFAMIAYFVLKPRCLQKGSLTVQQVNDILDSIASNNSAKRKDLVKKSVLQLITQSSA
LEQKWLIRMIVKDLKLGFSQKTIFSIFHNDAEELHSVTTDLEKVCRQLHDPLVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYED
QFGASPQEGSLTPFIHSTFKPDVQNCILDGEMMAYNPHTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGHETLRNRHEILNSVFTPIPGRIEIVQKTQAQTKKEVVDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVDELMDKLDILIVGGYWGKGSRGGMM
SHFLCAVAEKPTSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWMPFHKKAPPSNILC
GTEKPEVYIEPCHSVIVQVKAAEIVPSDMYKTGCTLRFPRIEKIREDKEWHECTTLDELE
QLRGQASGKLASKHLHIGGDDEPQEKKRKAAPKVKKVIGIIEHLKAPNLSNISKVSNIFE
DVEFCVMSGTDGHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGAQNIRVKNIISSNKHDV
VKPEWLLECFQTKRCVPWQPRVMIHMCPSTREHFAREYDCYGDSYFVDTDLNQLKEVFSG
MKDPGGQTPGETAAVIADLEHRYSWDSSHLSMFRSHTVYLDLYTVINDLSTKIEGTRLAI
TALELRFHGAKVVSCLAEGVSHVIVGEDRSRVADFKAFRRALKRKFKILQECWVTESIDK
CELQEEDQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcccaaacttcacaaactgttgcctctcacgttccttttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaaggacgggcagaaaaaatcagacacttcaaa
gaatttttagattcttggagaaaatttcacgatgcccttcataagaaccagaaagatgtc
acagactcgttttatccagccatgagacttatccttcctcagctggaaagagagagaatg
gcctatggaatcaaagagactatgcttgctaagctttacattgaactgcttaacctaccc
agagaaggaaaggacgcccttaagctcctgaattacaggacgcctactggagctcgtgca
gacgccggagacttcgcgatgattgcgtactttgtgttgaagcccagatgtttgcagaaa
ggcagtttaaccgtccagcaagtaaatgacattttagactccattgccagcaataattct
gccaaaaggaaggacctggtaaagaagagtgttcttcagcttataactcagagttcagca
cttgaacagaagtggctgatacggatgattgtaaaggacctcaagcttggttttagtcag
aagactatattttctatttttcataatgatgcggaagagttgcacagtgtcaccacagat
ttggagaaagtctgtaggcagctgcatgaccctttggtcggactcagtgacatttctatc
actttattctcagcctttaaaccaatgctggctgccatagcggatattgagcgaatcgag
aaggacatgaaacaccagagtttctacattgaaaccaagctagacggcgagcgcatgcag
atgcacaaagacggagatgtgtaccagtacttctcacgaaacgggtacaactatgaggac
cagtttggtgcttccccacaggaaggctctctgacgccgttcattcacagtactttcaag
ccagacgtgcagaactgtatcctggacggtgagatgatggcctacaaccctcatacacaa
acatttatgcagaaggggaataaatttgatattaaacgaatggttgaagattctgatctg
cagacttgttactgtgtttttgatgtgttgatggttaataataaaaagctaggacatgag
accctgagaaacaggcatgaaattctgaatagtgttttcacaccaatcccaggtagaata
gaaatagtgcagaagacacaagcccagactaagaaagaagtagttgacgctttgaatgaa
gcaatagataaaagagaagagggaatcatggtaaagcatcctctttctatttacaagcca
gacaaacgaggtgaaggatggttaaaaattaaaccagagtatgttgacgaattaatggac
aaactggacatcttgattgtcgggggctattggggtaaaggttcacggggtggaatgatg
tctcattttttgtgtgctgtggcagagaagcccacttctggggaaaaaccatcagtgttt
catactctctgtcgtgttggctcaggttacaccatgaaagagctgtatgacctgggtttg
aaattggccaaacactggatgccttttcacaagaaggctccacccagcaacattttatgt
ggaacagagaagccagaggtatacattgaaccttgccactcggtcattgttcaggttaag
gccgcagagattgtccccagtgacatgtataaaactggctgcacgttgcgttttccacga
attgaaaagataagagaagacaaagagtggcatgagtgcacaaccctggatgagctggag
caacttcgggggcaagcatctggaaagctcgcgtctaaacaccttcacataggtggtgat
gacgaaccacaagagaaaaagcgcaaagctgcccccaaggttaagaaagtcattggaatt
atcgagcacctaaaagcacctaacctctctaacataagtaaagtttctaatatatttgaa
gatgtggagttttgtgttatgagtggaacagacggccacccaaagcctgatctggagaac
agaattgcagaatttggtggttatatagtacagaatccaggcccagacacatactgcgtg
atcgcaggggctcagaacattagagtgaaaaacataatttcttcaaataagcatgatgtc
gtcaagcctgagtggcttttagagtgtttccagaccaaacgctgtgtgccctggcagcct
cgcgtcatgattcacatgtgcccatcaacaagagagcattttgcccgtgagtatgactgc
tatggtgatagttattttgttgacacagatttgaaccagctgaaggaagtgttctcagga
atgaaagatcctgggggacagactcctggagagacggccgctgtgatcgccgacttggaa
caccgctattcctgggacagctctcatctcagtatgtttcgaagccacactgtttatttg
gacttgtacactgttattaatgacttaagtaccaaaatcgagggaacaagattagcaata
acagccttggagcttcgatttcacggagcaaaagtggtttcttgtttagccgagggcgta
tcacatgtaatcgttggggaagatcgtagtcgtgttgcagattttaaagcttttcgaaga
gctcttaagagaaagtttaaaatcctacaagaatgttgggtaactgaatcaatagacaag
tgtgaattacaggaggaagatcagtatttggtttaa
DBGET
integrated database retrieval system
