Vicugna pacos (alpaca): 102541674
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Entry
102541674 CDS
T08098
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03013
Nucleocytoplasmic transport
vpc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102541674 (UPF1)
03015 mRNA surveillance pathway
102541674 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102541674 (UPF1)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102541674 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102541674 (UPF1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102541674 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102541674 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
102541674
NCBI-ProteinID:
XP_015090495
UniProt:
A0A6J0ACY4
LinkDB
All DBs
Position
22
AA seq
765 aa
AA seq
DB search
MRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDF
VWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH
SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK
IHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEK
RYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG
AKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPS
NIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANV
EKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGRE
KDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYK
EQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQG
RPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKG
KTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLS
QPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcggctcatgcagggggacgagatatgcctgcggtacaaaggggacctggcgcccctg
tggaaagggatcggccacgttatcaaggtccctgataattatggtgatgagattgccatt
gagcttcgaagcagtgtgggcgcgcccgtggaggtgactcataacttccaagtggatttt
gtgtggaagtcaacctcattcgacaggatgcagagtgcattgaaaacctttgctgtggac
gagacctccgtgtcgggctacatctaccataagctgctcggccacgaggtggaggatgtg
atcatcaagtgccagctgcccaagcgcttcacggcacaggggcttcctgacctcaaccac
tctcaggtttatgccgtcaagactgtgctacagagaccattgagcctgatccagggacca
ccgggcacaggaaagacagtgacctcagccaccatcgtctaccacctggctcggcaaggc
aatgggcctgtgctcgtctgtgctccaagcaacatagctgtggatcagctgactgagaag
atccaccagaccgggctgaaagtcgtgcggctctgtgcaaagagccgcgaggctattgac
tccccggtgtccttcctggccctgcacaaccagatcagaaacatggacagcatgccagag
ctccagaagctgcagcagctgaaggatgagactggggagctgtcgtccgcggacgagaag
cggtaccgggccctgaagcgcactgctgagagggagctgctcatgaacgctgatgtcatc
tgttgcacgtgcgtgggcgcgggggacccgaggcttgccaagatgcagttccgctccatt
ttaatcgatgaaagcacccaggccaccgagccagagtgcatggtccccgtggtccttgga
gccaagcagctgatccttgtgggtgaccactgccagctgggccccgtggtgatgtgcaag
aaggcggccaaggccgggctgtcccagtcactcttcgagcgcctggtggtgctgggcatc
cgtcccatccgcctccaggtccagtatcggatgcaccctgcgctcagtgccttcccatcc
aacatcttctacgagggctctcttcagaacggtgtcactgcagcggatcgtgtgaagaag
ggctttgacttccagtggccccaaccagataaaccgatgttcttctacgtgacccagggc
caagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgcaaatgtg
gagaagatcaccacgaagctgttgaaggcaggtgccaagccagaccagatcggcatcatc
acgccctacgagggccagcgctcctacctagtgcagtacatgcagttcagcggctccctg
cacaccaagctctaccaggaggtggaaatcgccagtgtggatgcgttccaggggcgtgag
aaggacttcatcatcctctcgtgtgtgcgggcgaatgagcaccaaggcattggattttta
aacgaccccaggcggcttaatgtggccctgaccagagcgcgatatggggtcattattgtg
ggcaacccaaaggccctgtccaagcagcctctctggaaccacttgctgaactactacaag
gagcagaaggtgctcgtggaggggcccctgaataacctgcgggagagcctcatgcagttc
agcaagcccaggaagctggtcaacaccatcaacccaggagcccgattcatgacaacagcc
atgtatgatgcccgggaggcgattatcccaggatcagtctatgaccggagcagccagggc
cggccctcaaacatgtacttccagacccatgaccagattggcatgatcagtgctggcccc
agccatgtggccgccatgaacattcccatcccctttaatctggtcatgccacccatgcca
ccgccggggtattttggacaagctaatgggccagctgcaggccggggcaccccgaaaggc
aagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagtcagacg
aatctccctaacagccaggctagccaagatgttgcgtcacagcccttctcacagggtgcc
ctgacccagggctacatctccatgagccagccctcccagatgagccagcccggcctctcc
cagcctgagctgtcccaggacagttaccttggagatgagtttaagtcacagattgatgtg
gcgctgtcacaagactccacataccagggagagcgggcgtaccagcacggcggagtgacg
gggctgtcccagtactag
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integrated database retrieval system
