Vicugna pacos (alpaca): 102541954
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Entry
102541954 CDS
T08098
Symbol
CHD6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vpc03036
]
102541954 (CHD6)
Chromosome and associated proteins [BR:
vpc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102541954 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
102541954
NCBI-ProteinID:
XP_015093297
UniProt:
A0A6J0AHE3
LinkDB
All DBs
Position
19
AA seq
2721 aa
AA seq
DB search
MIMKIQKKEKQLSHLKVLNHSPMSDASVNFDYKSPSPFDHSTDQEEKIEDAASHCLPQKD
LYAAEEDAETPLPRKTTSHNGTEDSGGGGTGVKKKRKKKDPGEQEGAAKGSKDREPKPKR
KREPREPKEPRKAKEPKRAKEPKEPKEPKPKDGARKARKPREASGAREAKEKRSSTDPAA
RAKSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLPNSSLRSPEESTESADSQKRR
SGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKI
LASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQ
MKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEED
VDPAKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWY
NRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAI
VYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVII
DEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE
EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK
NFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSPDAPDFQLQA
MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL
RQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG
QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLR
KGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISL
DDPNFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDE
RPTRSRRLNDKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRAL
LVYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLLPE
LKNADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAADKAFEGTPA
RELEVPLPDIDYVEIPADWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDE
KSLSAEQGVTDGASDVPERGNTDKEDNTEDKVDGLQKQMENSSDGADGIFGEKKDDSRAA
QDGSDPDKSPWPVSSALTARLRRLVTVYQRCNRKELCRPEILGPGSQGYWVQEEMFRRTS
EMDLINKEAQKRWTRREQADFYRTVSSFGVVYDQXKKTFDWTQFRIISHLDKKSDESLEH
YFYSFVAMCRNVCRLPAWKDGGPTDPSIYVEPITEERAARTLYRIELLRKVREQVLRCPQ
LHERLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMTDPQLSFLDAYRNYAQ
HKRTDPQAPESLCCLYPTNSKLYDSLTYAHMSRTSESLEHEPENLVKIEGRDDHLGPPRG
SLCDITCENFISKVQDVISITHDESLLPDSLESMMYGKKVLSQEPGSFQESPGTNTESRP
DALAVSTSRDGNCQSGGHEAELASGPSLMDTLEAGVAQMNIKNEKHLLMSVSKEGELCCS
ETGQRPEGIGQLDTKCLASPSLDQGNESGFVDMCNLSVCDSKRNLSSDQQLIDLLENKSL
ESKLILGQNYSDEEEEEEENEDENLDLATGMRERPEVSPLTEPTAAMPREKSFGFLVDEA
KKGSLEARSQHPEPQGAFLPTACQCHCKHMERWARGLENDEFDVEKPQQYNPDLYKSKAN
NVAVEGEPAAVPSALFQVKRELLKEPWKDSAEGKQGFPACPEGSELKSEDMDFESRDEYD
RDGNCQGQDYPGKYSEEESKSSTSGIAGDFGDDLQEVRAPTIAQLLQEKTLYSFSEWPKD
RVIISRLDNICHVVLKGKWPSSQQYEPVGTLHTPLLTRSAGSRSSLSEPEASEHTFSNGA
ALVAQMQKESFLAPVFTKDEQKHRRPYEFEVERDVKTRSLEQFSATHGHPPIVLNGWHGE
SAIDLSCTVEGSPGATSPFPVSASTPKMGAIGSLQGALGMDLSGILQAGLIHPVTGQIVN
GSLRRDDAATRRRRGRRKHVDGGVDLIFLKEQTLQAGILEVHEDPGQTPLSTSHPPEGPV
PATSTPEPSPTASSQAEKALPSKSLLDWLRQQADYSLEAPGFGTNFSDKPKQRRPRCKEP
GKLDVNSLSGEERVPAVPKEPGLRGFLPENKFNHSLPEPVLRDAGPRRRGRRPRSELLKA
PTLVADSHSGMGPLFMNGLIAGMDLVGLQNMRNVPGIPLTGLVGFPAGFAAMPTGEEVKS
TLSMLPMVLPGMAAVPQMFGVGGLLNAPMAASCTSAPASLSGTTKSGTSVAEKTAEDKPG
GHDVKTDSLAEDKPGPSPFSDQSEPAITTSSPVAFNPFLIPGMSPGLIYPSMFLSPGMGM
TLPAMQQARHSEIVGLESQKRKRKKAKGDNPNPNPESAPGPEREPGGDQNCPESRAPVPL
DREHAAQAREGGTQDSHGDTN
NT seq
8166 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaagaaagagaagcagttgtcacatttaaaagttctgaatcac
tccccaatgtctgatgcttctgtcaattttgactacaaatccccctccccatttgaccac
agcactgaccaggaagagaaaattgaagatgctgccagtcactgtctgccccagaaggac
ctgtacgctgctgaagaggacgccgagacccctttgcccaggaaaacaacatcccataat
gggacggaggacagtggaggaggaggcactggcgtgaagaagaaacggaagaaaaaggat
ccaggagagcaagagggggcagcaaagggaagcaaggacagggagcccaagccaaagagg
aagcgagaacctagagagccaaaggagcccaggaaggccaaggagcccaagagggccaag
gagcccaaggagcccaaggagcccaagccgaaggacggggccaggaaggcacggaagccc
cgggaggcctcgggcgccagggaggccaaagagaaacggagcagcaccgaccctgcagcc
agggccaagtccaggaaggccagcaaggagcaaggaccaaccccagtggagaaaaagaag
aaaggaaaaaggaaaagtgaaaccacagtggagagtttagagctggatcagggcctgccg
aactcatccctgcgtagtcctgaggaatccaccgagtctgcagacagccagaaacgacgc
tcaggacggcaagtgaagcgcagaaaatacaacgaagacctggacttcaaagtggtggat
gatgacggggagacgatcgccgttctgggagccggccggacgtctgccctctcagcttct
acactggcttggcaggcagaggagcctccagaagatgatgcaaacatcattgagaagatc
ctggcgtctaagactgtccaggaggttcacccaggagaacccccgttcgacttggagctg
ttctatgtcaagtacagaaatttttcctacttacactgtaaatgggccacaatggaagag
cttgaaaaggatcctcgcatcgcacagaagatcaagcgatttaggaataaacaagcccag
atgaagcacatttttactgagcctgacgaagacttgttcaacccagactacgtggaggtt
gatcgcatcttggaggtggcccacaccaaggatgcagaaacaggagaggaagtgacacat
tacctggtgaagtggtgctcgctgccttacgaggaaagcacgtgggagctggaggaagac
gtggaccctgcaaaagttaaagaatttgaatctctgcaagttctccctgaaattaagcac
gtggagcggcctgcttcagactcgtggcagaagctggagaagtctcgagagtataagaac
agcaaccagctccgggagtaccagctggaggggatgaactggcttctttttaactggtac
aacagaaaaaactgcattttggctgatgagatgggcctagggaaaaccatccagtccatc
acattcctttcagaaatattcctcaggggaatccacggccccttcctcatcatcgccccg
ctctccaccatcactaactgggagcgggagttccggacgtggaccgagatgaatgccatt
gtgtaccacggcagccagatcagcaggcagatgatccagcagtatgagatggtgtacaga
gatgcacagggaaaccccctgtcaggagtcttcaagttccatgtcgtcattacaacattt
gagatgatcctggcagactgccccgagctgaagaagattcactggagctgtgtgatcatt
gatgaagcccacagactgaagaataggaactgcaaacttctggagggtctaaagctcatg
gccctggaacacaaggtgctgctcacggggacccccttgcagaactcggtggaggagctc
ttcagtctgctcaacttcctggagccatcacagtttccttcagagactgctttcttggag
gagtttggagatctgaaaacagaggagcaggtgaagaaactgcagtctatcctaaaacca
atgatgcttcgacggctgaaagatgacgtggaaaagaaccttgctcccaagcaagagacg
atcattgaggtagagctgaccaatatccagaaaaagtactaccgtgccatcctggagaag
aatttttccttcctgaccaagggggccaatcagcacaacatgcccaacctcatcaacacc
atgatggagctgagaaaatgctgtaaccacccctacctgatcaacggggcagaggagaaa
attttggaagacttccggaaagctcacagccctgatgcccctgactttcagctacaggcc
atgattcaagcagccgggaagctggtgctgattgataaactgctcccgaagctgattgct
ggtggccacaaagtactcatcttctcccagatggtgcgctgtctcgatatcctggaagat
tatctcatccagagaagatacacctatgagcgaattgatgggcgagtacggggaaacctg
cgccaggcagccatcgaccggttctgtaagccagactcagaccgctttgtctttcttctg
tgcacccgagcgggaggcctggggatcaatctcacagctgccgatacctgcatcatattt
gattcagactggaacccacaaaatgacttgcaggctcaggcccgatgtcaccggataggc
cagagtaaagccgtgaaggtgtatcgcctcatcactcggaactcctacgagcgggaaatg
tttgacaaggccagcctaaagctgggtctggacaaggctgttcttcaggacatcaaccgc
aagggcagcaccaacggagtacagcagctttcaaagatggaggtagaggacttgctccgg
aaaggtgcctatggtgccttaatggatgaggaagatgaaggctccaagttctgtgaagaa
gacatagaccagattctgcagaggagaacccacaccatcaccatccagtctgaagggaaa
ggatccacttttgccaaggctagctttgtggcttcaggaaacagaacggatatttcctta
gatgacccgaacttttggcagaaatgggctaaaatagctgaactggacactgaagcaaag
aatgaaaaggaaagcttagtgatcgaccgcccgcgcgtgaggaagcagaccaaacactac
aactcttttgaggaggatgagctcatggagttttcggagttggacagtgactctgatgag
aggcccacgaggtccaggcgcctcaatgacaaaaccaggcgctacctccgagccgagtgc
ttccgggtggagaagaacctgctcatctttggctggggccggtggaaggacatcctgact
catgggcggttcaagtggcatctgaacgagaaggacatggagatgatttgccgcgccctg
ctggtgtactgtgtcaagcactacaagggagatgagaagatcaagagtttcatttgggaa
ttgatcacacctaccaaagatgggcaggcccagaccctccagaaccactcagggttgtct
gctccagtccccagagggaggaaggggaagaaaacgaagaaccagctgctgctcccagag
ttaaagaacgcagactggctggccacctgcaaccccgaggtggttttgcatgatgacggc
tacaagaagcacctgaaacagcactgcaacaaggtacttttgcgtgtccggatgctttac
tacctgaaagccgaaatactgggagaagcagctgataaagcgtttgaaggaactcctgcc
agggagctggaggtgcctctgcccgacatcgactatgtggagatcccagcggattggtgg
gacgctgaggccgataagtcccttctgattggcgtgttcaaacatggttacgagaggtac
aacgccatgcgagcagacccagcgctttgtttcctggagaaggttgggatgccggacgag
aagtccctttctgcagagcagggcgttacagatggggcctcagatgtcccggaaagaggc
aacacagataaagaagacaatactgaagacaaagtagatggcctccagaaacaaatggag
aattccagtgatggagctgatggcatttttggtgaaaagaaggatgacagccgggcagcc
caggatggctccgacccagacaaatcaccctggccagtttcgtccgccctcacagcccgt
ctccgacgcctggtcactgtttaccagcgctgtaaccgcaaggagctctgccgacctgaa
atcctgggaccaggaagccaaggctactgggtccaggaggagatgttccggagaacctca
gagatggatctcatcaacaaggaagcccaaaagaggtggaccaggagagagcaagccgac
ttctacagaacagtatcttcctttggtgtcgtttatgatcaangaaagaaaacctttgac
tggactcagtttcgcatcatttcgcatttggacaagaagtcggacgagagcctggagcac
tatttttatagttttgtggccatgtgccgaaacgtctgtcgtctgccggcgtggaaggat
ggcggccccacagatcccagcatctacgttgaacccatcactgaagaacgggccgcaaga
accctgtatcgcattgaactgttacggaaggttcgagagcaagtgctgagatgtccacag
ctgcacgagcgcctgcagctgtgcaggcccagcctctacctccccgtctggtgggagtgt
gggaagcacgatcgagacctgctgatcggcaccgccaagcacgggctgaaccgcaccgac
tattacatcatgaccgacccccagctgtccttcctggacgcctacagaaactatgcccag
cacaaaagaactgacccccaggcaccagagagtctctgttgcctttacccgaccaactcc
aaactctatgactctcttacctacgctcacatgagcaggacttccgaatcccttgaacat
gaaccggagaatctagtgaaaatagaaggtagagatgaccatcttggtccgcccagggga
agcttatgtgacataacgtgtgaaaactttatttctaaagttcaggatgtcatttccatc
acccatgatgaaagtctgctgcctgactccttggagagcatgatgtatggtaagaaggtg
ctgagccaagagccaggctcttttcaggagagcccaggcaccaatacagaatctagacct
gatgctctggccgtctccacaagcagagatgggaactgccagtctggtggccatgaggca
gaactagcctcaggcccctctcttatggacactttagaagcaggggtagctcaaatgaac
attaaaaatgaaaaacatttgttgatgtctgtttcaaaggaaggggaactgtgctgcagc
gagacaggacagagacctgaaggcattgggcagctggacaccaaatgcttagcctcccct
tccttggaccaaggaaatgaaagtgggtttgtagacatgtgcaatctgagtgtctgcgac
tccaaaagaaacctgtcgtcagatcagcagttaattgatttattagaaaacaaaagttta
gaaagtaaattgattctgggtcagaactacagtgatgaagaggaggaggaggaagaaaat
gaggatgaaaacctagacctggccacaggcatgagggaaaggccagaggtctcgcctctc
accgagcccactgctgccatgccaagggagaagagctttggcttccttgtagacgaagcc
aagaaaggaagcctggaggccagaagccagcatcctgaacctcagggggcttttctcccc
acagcctgtcagtgtcactgcaaacacatggagaggtgggcacgcggcctcgagaatgac
gagttcgacgtggagaagccccagcagtataacccagacctgtacaaaagcaaagccaat
aatgtcgcagtggagggtgagcccgcggctgttccttcagcgctgtttcaggtgaagcgt
gaacttttaaaagagccctggaaagacagcgcagaagggaaacagggttttcctgcgtgt
cccgaaggaagtgagctcaagtcggaagacatggattttgagagtagagacgaatatgac
agagatggaaactgccagggtcaagattatcccgggaaatactctgaggaggagagcaag
agctcaacttcgggcatcgcaggagactttggggatgacctccaggaggtgcgggctccc
accattgctcagctgctccaggagaaaaccctctattccttctctgagtggccaaaggat
cgtgtgataatcagccgcctagataacatctgccacgtggtgctgaaggggaagtggccc
tccagccagcagtacgagcccgtaggcacgctgcacacccccctgttgacccgcagcgct
gggtctcggagcagcctctcggagccagaggcatcagaacacaccttcagcaatggcgcg
gcattggtggcccagatgcagaaggagagcttcttggctccagtattcacaaaggatgaa
cagaagcacaggcgtccttacgagttcgaggtggagagagatgtgaagactcggagcctg
gagcagttctctgccacccatgggcacccccccatcgtcctcaatggctggcatggagag
tcagcaattgacctctcctgcacggtggaggggtccccaggagccacatcccctttccca
gtgagcgccagcacccctaagatgggggctatcggttcacttcaaggagcccttggcatg
gacttgtctgggattttgcaagctggcctgatccatccagtgaccggacagatcgtcaac
ggaagcctcaggagagatgacgctgccacgaggaggcggagagggagacggaaacatgtt
gacggaggggtggacctcatctttctgaaggaacagacccttcaggcaggaatcttggag
gtccacgaagacccagggcagacccccctgagcacctcacaccctcctgaagggccagtg
cctgccacgtcgaccccggagccatcccccacggccagcagccaggccgagaaagccctt
cccagcaagagcctgctggactggctgaggcagcaagctgactactccctcgaagctcct
ggctttggcacaaatttttcagacaaaccaaagcagaggcggccacgctgtaaggaacct
ggaaaattagacgtcaactccctgagtggggaagagagggttcctgctgtccccaaggag
ccaggactgagggggtttctcccagaaaacaagttcaatcacagcctacccgagcccgtt
cttcgagatgcgggcccccgccgcaggggcaggaggccccggagcgagctcctgaaggct
cccaccctcgtggcggactcccactccgggatggggcctctgttcatgaatggactgatc
gccgggatggacctggttgggcttcagaacatgagaaacgtgccaggcatccccctcacg
gggctggtggggttcccggccggctttgctgcgatgcccacaggcgaagaggtcaagagc
acgttgagcatgctgcccatggtgctgccgggcatggccgccgtgccccagatgtttggg
gtcggggggctcctcaatgcccccatggccgccagctgcacttctgcaccagcgtcgctg
tcaggcacaacgaagagcggcacgtcagtggccgaaaagactgcagaagataagcccggc
ggccatgatgtgaaaacggacagcttagccgaagacaagcctggcccgagtccgttttcc
gatcagtctgaacctgcaataactacgagtagtcctgtggcttttaacccatttctcatc
ccaggaatgtcccccggactcatttacccatccatgtttctctcccctggcatgggcatg
accctgccagccatgcagcaggccagacactctgaaatagtaggtctggagagccagaag
aggaagaggaagaaagcaaaaggggacaacccgaaccccaacccagagtctgcacccggg
ccggagagggagccgggcggtgaccagaactgccccgaatccagggcccccgtgccccta
gatagagaacacgcggcacaggccagggaagggggcacccaagactctcacggtgacacc
aattag
DBGET
integrated database retrieval system
