KEGG   Variovorax paradoxus B4: VAPA_1c02350
Entry
VAPA_1c02350      CDS       T02835                                 
Name
(GenBank) type VI secretion ATPase, ClpV1 family
  KO
K11907  type VI secretion system protein VasG
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VAPA_1c02350
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpd02044]
    VAPA_1c02350
Secretion system [BR:vpd02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   VAPA_1c02350
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 ClpB_D2-small AAA_16 AAA_22 Sigma54_activat AAA_7 AAA_18 ATPase_2 nSTAND3 Zeta_toxin AAA_25 Clp_N NACHT Rad17 T2SSE TsaE AAA_24 AAA_30 DUF815 AAA_33 Hpr_kinase_C
Other DBs
NCBI-ProteinID: AGU47365
UniProt: T1X5B3
LinkDB
Position
1:243977..246733
AA seq 918 aa
MTDIRRVSLFSKLNPMLYKALETATAFAKLRGNAYVELVHWLHQILQLQDSDLLRIVKRA
GLNLDAVEQDLVRALDRLPHGATSISDISEHVDNAVERAWVYASLRFEATSIRGAYLLAG
IVKTPGLRQVLSGISREFDKIVPDVLIAQLPAWTEGSPEDDFDAAAAPGQAAAAVSHQGE
GAAAGGSALAKYASDLTAKARAGELDPVYGRDDEIRQIIDILMRRRQNNPLLTGEAGVGK
TAVVEGLASRLAAGDVPPSLKDVSLWVLDPTLLQAGAGVKGEFEQRLRQVIDEVEKSPRP
IVLFVDEVHTLVGAGGTAGTGDAANLLKPALARGRLRTIGATTWSEYKKYIEKDPALTRR
FQTIQVHEPTESKAVVMLRGISAELEKHHGVLILDAALEAAVSLSHRYIPARQLPDKAVS
LLDTACARVALSQHALPAAIEDLQRRIEVLGIESGIAGREAAIGVGEHQRVEDIAAQVAV
ARAELDLLEKRRVEESVLVERIVALRKLLSPDAVPVRAEAQPDDEAEEEGDAEEEGDAEA
PARAEAVLSEPERTPEEIRAELDQAQDRLVQLQGESPLILAAVDAQAIATVVADWTGIPI
GRMVRDDAQSVLRLGEILSARVVAQPDALETISRRIRTARARLDNPNKPVGVFLLCGPSG
VGKTETALALSEALYGGEQNLVTINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRR
RPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTVIIMTSNVGTDLVMQL
CEDPTLRPDPEPLAAALREPLLKVFAPALLGRLVVVPYYPLQADALHRIIRLQLDRIAAR
LDANHGIALDYNDSAVELVARRCTAIESGGRMIDAILTHTILPRLSEEVIGATVSARKLA
GVRLSAANDDFHYEFSER
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgaccgatatccgccgcgtctcccttttctccaagctgaatccgatgctctacaaggca
ttggagaccgccaccgcattcgccaagctgcgcggcaacgcctacgtggagctggtgcac
tggctgcaccagatcctgcaactgcaggacagcgacctgctgcgcatcgtcaagcgcgcc
ggcctcaacctcgatgcggtcgagcaggacctcgtgcgcgcgctcgaccgactgccgcac
ggcgccacgtcgatcagcgacatttcggagcacgtcgacaacgccgtcgagcgcgcctgg
gtctatgcgagcctgcgcttcgaggccacatcgatccgcggtgcctacctgctcgcgggc
atcgtcaagaccccggggctgcgccaggtgctctcgggcatctcgcgcgagttcgacaag
atcgtgcccgacgttctcattgcccagcttcccgcatggaccgagggctcgcccgaggac
gacttcgacgctgcggccgcgccggggcaagccgccgcagcagtgtcccaccagggcgag
ggcgctgccgcgggcggctctgcgctggccaagtacgcgagcgacctcacggccaaggcg
cgtgcgggcgagctcgatccggtctacggccgcgacgacgagatccgccagatcatcgac
atcctcatgcgccggcggcagaacaatccgctgctcaccggcgaagcgggcgtgggcaag
acggccgtggtcgaagggctggcctcgcggctcgcggcgggcgacgtgccgccctcgctc
aaggatgtgtcgctctgggtgctcgaccccacgctgctgcaggccggcgcgggcgtgaag
ggtgagttcgagcagcggctgcgccaggtgatcgacgaggtcgagaagagccccaggccc
atcgtgctgttcgtcgacgaggtgcacacgctggtcggcgcgggcggcacggccggcacc
ggcgatgcggccaacctgctgaagccggcgctcgcgcgcgggcggctgcgcaccatcggc
gccaccacctggtccgagtacaagaagtacatcgaaaaggacccggcgctcacgcggcgc
ttccagaccatccaggtgcacgagcccaccgagtccaaggccgtggtcatgctgcgcggc
atttcggccgagctggagaagcatcacggcgtgctcattctcgatgccgcgctcgaagcg
gccgtgagcctgtcgcaccgctacattcccgcgcgccagctgcccgacaaggccgtgagc
ctgctcgacaccgcttgcgcgcgcgtggccctgagccagcatgcgctgcccgccgcgatc
gaagacctgcagcgccgcatcgaggtgctgggcatcgagtcgggcattgccgggcgcgag
gcggcgatcggcgtcggcgagcaccagcgcgtggaggacattgcggcccaggtggccgtg
gcgcgggccgagctcgacctgctcgagaagcggcgcgtggaagaaagcgtgctcgtcgag
cgcatcgtggcactgcgcaagctgctgtcgcccgacgcggtgccggtgcgggccgaggcg
cagccggatgacgaggccgaggaggagggcgatgccgaggaggagggcgatgccgaggca
ccggcccgggccgaggccgttctgtccgagcccgagcgaacgcccgaagagatccgcgcc
gaactcgaccaggcgcaggaccggctcgtgcagctgcagggcgaatccccgctcatcctg
gcggccgtcgacgcgcaggccattgccaccgtggtggccgactggaccggcattccgatc
ggccgcatggtgcgcgacgacgcgcagtcggtgctgcgcctcggcgagatcctctcggcc
cgcgtcgtcgcgcagcccgatgcgctggagaccatctcgcggcgcatccgcaccgcccgc
gcgcggctcgacaatccgaacaagcccgtcggcgtgttcctgctgtgcggcccctcgggc
gtgggcaagaccgagaccgcgctggcgctgtccgaagcgctgtacggcggcgagcagaac
ctcgtcaccatcaacatgagcgagttccaggagtcgcacaccgtctccacgctcaagggc
gcgccgccgggctacgtgggctacggcgaaggcggcgtgctcaccgaggccgtgcgccgg
cgtccgtacagcgtggtgctgctcgacgaaatcgagaaggcccaccccgatgtgcacgag
atcttcttccaggtgttcgacaagggctggatggaagacggcgagggccgccacatcgat
ttccgcaacaccgtgatcatcatgacctccaacgtcggcaccgacctggtcatgcagctg
tgcgaagacccgaccctgcgccccgacccggagcccttggcggccgcattgcgcgaaccg
ctgctcaaggtgttcgcgccggcgctgctgggccggctggttgtagtgccttattacccg
ttgcaagccgatgcgttgcaccgcatcattcgccttcagctcgaccgtattgccgcgcgc
ctcgatgcaaaccatggcattgccctggactacaacgacagcgccgtcgaactggtggcg
cgccggtgcaccgccatcgagtcgggcggacggatgatcgatgcgatcctcacgcacacc
atccttccgcggttgagcgaagaagtcatcggtgccacggtcagtgcgcgcaagctcgcc
ggcgtgcggttgagcgcggcgaacgacgatttccactacgaattttctgaacgctga

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