Variovorax paradoxus B4: VAPA_1c07590
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Entry
VAPA_1c07590 CDS
T02835
Name
(GenBank) alginate lyase-like protein
Organism
vpd
Variovorax paradoxus B4
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Gene cluster
GFIT
Motif
Pfam:
Laminin_G_3
Alginate_lyase
Laminin_G_1
Laminin_G_2
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
AGU47882
UniProt:
T1X4P4
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Position
1:826407..828533
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AA seq
708 aa
AA seq
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MHQPNSEDNINPLDRRAFCVGAMSLVALGTTACGGGGGGGGGTAGGLGALGSAPPADASA
VAAAPAPATVPDAAPPAPQARKFAHPGLLHTEADFERMRLKVAANAQPWLAGWNALISNG
RSQLGATPRPLATVIRGGDGQNFAQMYIDIARTYQLALRWKVSGDTRYADLAVVFLNAWS
STLTSIEGNADRFLAAGIYGQQFANAAEIMRSYAGWAASDLARFQNMMLTVFYPLNHSFL
VNHNGSEITNYWANWDQCAMGSILAIGVLCDRQDIYDEALDYYRNGAGNGAGLQAVYHVH
PGYLGQWQESGRDQGHCTLGIGLAGAFCEMAWNQGDDIYGYENNRFLAGAEYVAKSNLRD
GAGNFYTVPFLTSANRQGTKTVLSTSGLGHQRGIWESVYNHYANRLGIATPYTALQAAQM
RPESDGGNGDQLGFGTLTYTRDPIATPVRPSGLTARVHGSQVELSWWGCTGALSYSVKRA
TVAGGPYATVATGISDTLTFTDSTVAPGVVYHYAVVALTAAGEGDPSDEARAPIKAELLL
QLGFGETQNAADYADLPVGLLKNVADFTIACRVHLDEIATWSRVFDFGSGERRYMMLTPR
SNAGTVRYAISPVHGYNMQMIEGSSPLPTGRWVHVAVTLSGTLGTLYIDGAVAGSNAQMT
FAPCELGETTQNFLGRSQYPNDPPLRGRLDDFRVYQGALSAAEISLLA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagccaaacagcgaagacaacatcaatcccttggaccgccgtgcattttgcgtg
ggcgccatgagcctcgtcgccctgggcaccaccgcttgcggaggaggtggtggcggcggc
ggcggcacagcgggcggcctcggcgcgctgggcagtgcgccgccggcggatgcatcggcc
gtggcggccgccccggcccccgcgaccgtgcccgacgcggcgcctcctgcaccgcaggcg
cgaaagttcgcgcatcccggcctgctgcacaccgaagccgacttcgagcgcatgcgcctg
aaggtcgcggccaatgcgcagccctggctcgccggatggaatgcgctgatatccaacggc
cgttctcagctcggcgccaccccgcggccgctggccacggtgatacgcggcggcgacggg
cagaacttcgcacagatgtacatcgacatcgcgcggacctaccagctcgcgctgcgctgg
aaggtttccggggatacacgctatgccgacctggcggttgtgttcctgaacgcgtggtcg
tccacgctgacgtcgatcgaaggcaatgcggaccgcttcctggccgcggggatctatggc
cagcagttcgcgaacgcggccgagatcatgcggtcctacgccggatgggcggccagcgac
ctcgcgcgcttccagaacatgatgctgaccgtgttctatccgctcaaccacagcttcctg
gtcaatcacaacggctccgagatcaccaactactgggccaactgggaccagtgcgcgatg
ggctcgatcctggccatcggcgtgctgtgcgaccggcaggacatctacgacgaggcgctc
gactactacaggaacggcgcgggcaacggcgcgggcctgcaggcggtctaccacgtgcat
cccggctaccttggccaatggcaggagagcggccgcgaccagggccactgcacgctgggc
atcggcctggcgggcgcattctgcgagatggcgtggaaccagggcgacgacatctacggc
tacgagaacaaccgcttccttgccggcgccgaatacgtggcgaagtccaacctgcgcgac
ggcgccggcaacttctacaccgtgcccttcctcaccagcgccaaccggcagggaacgaag
accgtgctgtcgaccagcggcctcggccaccagcgcggcatctgggaaagcgtctacaac
cactatgcgaaccgcctgggcatcgccacgccctacaccgcgctgcaggccgcgcagatg
cggcccgaatcggacggcggcaatggcgaccagctcggcttcggaacgctcacctacaca
cgcgatccgatcgcgacgcccgtgcggccgagcgggctcaccgcgcgggtgcatggatcg
caggtcgagctgtcgtggtggggctgcacgggcgcgctgagctactcggtcaagcgcgcc
accgtggcgggcggcccgtacgccacggtggccacgggcatcagcgatacgctgaccttc
accgacagcactgtcgcgcccggcgtggtgtaccactatgcggtggttgcgctgaccgcg
gccggagaaggcgacccttccgacgaggccagggctcccatcaaggccgaactgctgttg
cagctcggcttcggcgagacgcagaacgcggcggactacgcggaccttcccgtgggcctg
ctgaagaacgtggccgacttcaccatcgcatgccgggtgcacctggacgagattgcgacc
tggtcgcgcgtcttcgacttcggctccggcgagcgccgctacatgatgctgacgccgcgc
agcaacgccggcacggtgcgctatgcgatctctcctgtccacggctacaacatgcagatg
atcgaaggctcgtcgccgctgccgaccggccgctgggtgcatgtggcggtgaccttgtcc
ggcacgctcggcacgctgtacatcgatggtgcggtggccggcagcaatgcgcagatgacc
ttcgcgccctgcgaactcggagagacgacgcagaactttctcgggcgttcgcagtatccg
aacgatccgccgctgcgcgggcgcctcgacgatttccgcgtgtaccagggcgcgctgagc
gctgcggagatttcgttgctggcctag
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