Variovorax paradoxus B4: VAPA_1c17500
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Entry
VAPA_1c17500 CDS
T02835
Name
(GenBank) putative DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VAPA_1c17500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c17500
Enzymes [BR:
vpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VAPA_1c17500
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VAPA_1c17500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AGU48858
UniProt:
T1X8H8
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All DBs
Position
1:1885494..1888049
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AA seq
851 aa
AA seq
DB search
MARANPLKRYKEKRNFGVTPEPEEGGASAPGVLQFVVQKHWATRLHYDFRIELDGAMKSW
AVPKGPSYDTHDKRMAVHVEDHPISYNRFEGEIPPRQYGAGKVMIWDKGTWTPIGDPRKG
YKAGHLKFELHGYKLRGKWALVRMHGNAKDKQDAWLLIKEHDAYARAATEFSVVDQFPDS
VAEMPMPAAAVSAHGAAAPVPARKRGKSTAGGMPADAVKAAMPAKLSPLLATLVDGPPPD
PENWFYEIKFDGYRLLARVDAKGGVQLLTRNGHDWSGRMPHLVRAIERMKLKPGWLDGEI
VVLNESGGTDFQALQNAFDSEKTRNIVYFLFDLPYYGGFDLTGVPLVERRGLLQALLAKA
PPEIRFSEIFDAPPEDIIASACKIGLEGVIGKRKNSTYASRRSPDWIKLKCSQRQEFVIG
GYTDPKGSRVGIGALLIGVHDDRGDLVYAGAVGAGFNGRALADMLERLKPLGVDKRPFKN
PTENDRRAHWVKPVLLAEVTFSDWTKDGHVRHPVFHAVRSDKPAKAIVREKPVHQAGADR
EPEPEPAATMPANFKVSHADRVVDPSTGITKVEVVRFYGLVAPLMMAHLKGRPVSFVRAP
QGINGPLFFQKHLELGQMAGVRQLDAALWPDHPELIEVAGPLGLLSAAQMNVIEFHTWNG
VKTLIGKPDRMTFDLDPGEGVGWPTVLQAAELMRVVLDELGLAPFCKTSGGKGLHVVVPL
KRQYDWDTIKDFSQAIVRHMARTLPQMFVAKSGPGNRVGRIFIDYLRNGFGATTICAWSV
RARPGMGVSVPVEWQEVPTLTSGAQWTLRNIHARLDRGNDPWAGYAKAAKSPGAAMKMLG
FEAASARARKR
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcaaacccgctgaagcgctacaaggaaaagcgcaacttcggcgtcacgccc
gagcctgaggagggcggcgcctcggcgcccggcgtgctgcagtttgtggtgcagaagcac
tgggcgacccggctgcactacgacttccgcatcgagctcgacggcgcgatgaagagctgg
gccgtacccaagggcccgagctacgacacgcacgacaagcgcatggccgtgcatgtggag
gaccacccgatctcctacaaccggttcgagggcgagataccgccccggcagtacggcgct
ggcaaggtgatgatctgggacaagggcacctggacgcccatcggcgatccgcgcaagggc
tacaaggcggggcatctcaagttcgaactgcacggctacaagctgcgcggcaagtgggcc
ctggtgcgcatgcacggcaacgccaaggacaagcaggacgcgtggctgctgatcaaggag
cacgatgcgtacgcccgtgcagccacggagttcagcgtggtcgaccagttcccggacagc
gtggcggagatgccgatgcccgctgcggccgtttcggcgcatggcgcggcagcacccgtg
ccggcaagaaaacgcggcaagtcgaccgccggcggcatgcccgccgatgcggtgaaggcg
gccatgcccgccaagctctcgccattgctcgccacgctggtcgacggcccgccgcccgat
cccgagaactggttctacgagatcaagttcgacggctaccggctgctcgcccgcgtcgat
gcgaaaggcggcgtgcagctgctcacgcgcaacggccacgactggagcggccgcatgccg
cacctggtgcgcgcgatcgagcgcatgaagctgaagccgggctggctcgatggcgagatc
gtggtgctcaacgagtccggcggcacggacttccaggccttgcagaacgccttcgacagc
gagaagacgcgcaacatcgtctacttcctgttcgacctgccgtactacggcggcttcgat
ctcactggcgtgccgctggtggagcgccgcggcctgctgcaggcgctgcttgccaaggcg
ccgcccgaaatccgtttcagcgagatcttcgatgcaccgccggaagacatcattgcctcg
gcctgcaagatcgggctcgaaggcgtgatcggaaagcgaaagaacagcacctatgcctcg
cgccgctcgcccgactggatcaagctcaagtgctcgcagcggcaggagttcgtcatcggc
ggctataccgatcccaagggctcgcgggtgggcatcggcgccctgctgatcggcgtgcac
gacgacaggggcgacctcgtctacgccggagcggtgggcgcgggcttcaacggccgagcg
cttgccgacatgctcgaaaggctgaagccgctcggcgtcgacaagcggccgttcaagaac
ccgaccgagaacgaccgccgcgcgcactgggtcaagccggtgctgctggccgaagtcact
ttttccgactggacgaaggacggccatgtgcggcacccggtgtttcacgccgtgcgctcg
gacaagcccgccaaggccatcgtccgcgagaagccggtgcaccaggcgggcgccgaccgc
gaacccgagcccgaaccagccgccaccatgcccgccaacttcaaggtctcgcatgccgac
cgcgtggtcgatccatcgacgggcatcacgaaggtggaggtggtgcgcttctacggcctg
gtcgcgccgctgatgatggcgcacctcaagggccggcccgtgtcgttcgtgcgcgcgccg
cagggcatcaacgggccgctcttcttccagaagcacctcgagctggggcagatggccggc
gtgcggcagctcgatgcggcactgtggccggaccaccccgagctgatcgaggtggcaggc
ccgctcggtctcctcagtgcggcgcagatgaacgtcatcgagttccacacctggaacggc
gtgaagacgctcatcggcaagcctgaccgcatgaccttcgacctcgacccgggagagggg
gtcggctggcccacggtgctgcaggcggcggagctgatgcgcgtggtgctcgacgaactg
ggcctggcgccgttctgcaagaccagcggcggcaaggggctgcacgtggtggtgccgctc
aagcggcagtacgactgggacaccatcaaggatttctcgcaggccatcgtgcggcacatg
gcgcgcaccctgccgcagatgttcgtcgccaagagcgggccgggcaaccgcgtcggccgc
atcttcatcgactacctgcgcaatggtttcggcgcgaccaccatctgcgcctggtcggtg
cgggcgcgtcccgggatgggtgtgtcggtgccggtggaatggcaggaggtgccaacgctc
acgagtggtgcgcagtggaccttgagaaacatccatgcccggctcgaccgcggcaacgat
ccgtgggccggctatgcgaaggcggccaagagtccgggcgctgcaatgaagatgctggga
ttcgaagcagccagtgcgcgcgcacgcaaacgctga
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