Variovorax paradoxus B4: VAPA_1c29760
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Entry
VAPA_1c29760 CDS
T02835
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAPA_1c29760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c29760
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c29760
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VAPA_1c29760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
AAA_30
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AGU50069
UniProt:
T1XCN1
LinkDB
All DBs
Position
1:3138530..3142024
Genome browser
AA seq
1164 aa
AA seq
DB search
MDLPHLTAGKRFTLPRPPLSADALLLAQLGMREKAAGRATAMFTADANDAQRLIDEIAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPA
FLAGYTFHFKAKQKLQESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDLEPAFQHFWQDTNER
YRLVRGDPERPALPPEALFLSAEQFYQRAKPHAQLAIRGSAGGDVATDTPYAEFDKLPPF
AVVRGAEDPLVGLKLHIDTTPHRVLLIAESDGRRESLLDFLRASGVSPPAFDSLAEFEAS
TDEKIGIATAALASGFAWREQGIDLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSE
LNVGDPVVHTAHGIGRYRGLIHMDLDQGVDEQGKPLLQEMLHLEYADKATLYVPVSQLHQ
ISRYTGVSADEAPLHRLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSAA
DYEVFANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITG
GKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSTKEINSAAKGLAEGTVDIVV
GTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALE
GLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQK
LEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRA
DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMH
DLEIRGTGEVLGENQSGNMMEIGFQLYNEMLSEAVRSLKAGQEPDLLAPLSVTTEINLHA
PALLPDDYCGDVHLRLSFYKKLATAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRV
LARPYGVIKVDAAPGIIHITFKKDPPVDSMAIIQLIQKNKHIKLAGNEKLRIERELKEPK
ERAQMVRDVLRSLGQPIVKETAPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccacctcacggcgggcaagcgtttcacgctgccgcgtcctcctttgtcg
gccgatgccctgctgctggcgcagctgggcatgcgcgagaaggccgcgggccgcgccacc
gcgatgttcacagccgacgccaacgacgcacagcggctgatcgacgaaatcgccttcttc
gcgcccgagctgcgctgcgccctgttccccgactgggaaacgctgccctacgacagcttt
tccccgcaccaggacctgatcagcgagcggctcgccacgctctggcgcatcagccagaaa
gaggccgacgtggtgctggtgcccgccaccaccgcgctctaccgcctcgcgccgcccgcc
ttcctggccggctacaccttccacttcaaggccaagcaaaagctccaggaatccaagctc
aaggcccagctcacgctggccggctacagccacgtgacgcaggtggtgagcccgggcgaa
tacgcggtgcgcggcggcctgatcgacctctttcccatgggctcgccagtgccctttcgc
gtcgacctgttcgacgacgagatcgactcgatccgcaccttcgaccccgacacccagcgc
agcctctaccccgtgcccgaggtgcgcctgctgccgggccgcgagttcccgatggacgac
gacgcccgcgcgcgctttcgcagccgctggcgcgaactgctcgagggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggccacggtgttcgactacctgggcgcggacgccaccgtg
gtgctgcacggcgacctcgaacccgcgttccagcatttctggcaggacaccaacgagcgc
taccgcctcgtgcgcggcgaccccgaacgcccggcgctgccgcccgaggcgctgttcctg
agcgccgagcagttctaccagcgcgccaagccgcatgcgcagcttgccatccgcggaagt
gcaggcggcgacgtcgccacggacacgccctacgccgagttcgacaagctgccgcctttc
gccgtggtgcgcggcgccgaagacccgctggtcggcctcaagctccacatcgacacgacg
ccgcaccgcgtactgctgatcgccgaaagcgacggccggcgcgaaagcctgctcgacttc
ctgcgcgccagcggcgtgagcccgccggccttcgactcgctggccgagttcgaagcctcc
accgacgagaagatcggcatcgccaccgccgcgctggcctcgggcttcgcgtggcgcgag
caaggcatcgacctcgttaccgagaccgagctgttcgccaccgcccccaccacgcgccgc
cgcaacaagaagcaggagcaggtcagcgacgtcgaggcgctgatcaaggacctgtccgag
ctcaacgtcggcgacccggtggtccacaccgcgcacggcatcggccgctatcgtggcctg
atccacatggacctggaccagggcgtcgatgaacagggcaagccgctgctgcaggagatg
ctgcacctggagtacgccgacaaggccacgctctacgtgcccgtctcgcagctgcaccag
atcagccgctacaccggcgtcagcgccgacgaggcccccctgcacaggctgggttccggc
cagtgggaaaaggccaagcgcaaggccgccgaacaggtgcgcgactcggccgccgagctg
ctcaacatctacgcccgccgcgccgcgcgcgaaggccatgccttccgctactcggccgcc
gactacgaggtgttcgccaacgacttcggcttccaggaaaccgccgaccagaaggccgcg
atccatgccgtggtgcaggacatgatctcgccccagccgatggaccgcctcgtctgcggc
gacgtgggcttcggcaaaaccgaagtggcactgcgcgccgcgttcatcgcgatcaccggc
ggcaagcaggtggcgttccttgcgcccaccaccctgctggccgagcagcattaccagacg
ctggtcgaccgcttcgccaagtggccggtcaaggtggcggaaatgagccgcttccgctcg
accaaggaaatcaactcggccgccaaggggctggccgagggcacggtcgacatcgtggtc
ggcacccacaagctgctctcgcagtcagtcaagttcaagaacctgggcctgctcatcatc
gacgaggagcaccgcttcggcgtgcgccacaaggaggcgatgaaggcgatgcgcgccgag
gtcgacgtgctcacgctcacggccacgccgattccgcgcacgctgggcatggcgctcgaa
ggcctgcgcgacctgagcgtgatcgcgaccgcgccgcagcggcgcctggccatcaagacc
ttcgtgcgtaacgagggcacgggcgtgatccgcgaagccgtgctgcgcgaattgaagcgc
ggcgggcaggtctacttcctgcacaacgaggtcgagaccatcgagaaccggcgccagaaa
ctcgaagagatattgcccgaggcccgcatcgccgtggcccacggccagatgcccgagcgc
gagctggagcgcgtgatgcgcgacttcgtggcgcaacgctacaaccttctgctgtgctcg
accatcatcgagaccggcatcgacgtgccgaccgccaacaccatcgtgatgagccgcgcc
gacaagttcggcctcgcgcagctgcaccagctacgcggccgcgtcgggcgttcgcaccac
caggcctatgcctacctgatggtgccggacaccgaaggcctgaccaagcaggcggcgcag
cggctcgacgccatccagcagatggaagagctcggttccggcttctacctcgcgatgcac
gacctggaaatccgcggcacgggcgaagtgctcggcgagaaccagagcggcaacatgatg
gagatcggcttccagctctacaacgagatgctcagcgaggccgtgcgctcgctcaaggcc
gggcaggagcccgacctgctggcgccgctgtcggtcaccaccgagatcaacctgcacgcc
cccgccctgctgcccgacgactactgcggcgacgtgcacctgcgcctgtcgttctacaag
aagctcgccacggcgaagacgcccgaccagatcgacaccttgctcgaagaaatcgtcgac
cgcttcggcaagctgccgccgcaggcgcagacgctgatcgacacgcaccggctgcgcgtg
ctggcgcggccctatggcgtgatcaaggtcgatgccgcgccgggcatcatccacatcacc
ttcaagaaagacccgccggtcgattcgatggccatcatccagctgatccagaagaacaag
cacatcaagctcgccggcaacgagaagctgcgcatcgagcgcgaactcaaggagccgaag
gagcgtgcacagatggtgcgcgatgtgctgcgcagcctcggccaaccgatcgtcaaggaa
accgcccccgcatga
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integrated database retrieval system
