Variovorax paradoxus B4: VAPA_1c38480
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Entry
VAPA_1c38480 CDS
T02835
Name
(GenBank) type I secretion system outer membrane protein, TolC family
KO
K12340
outer membrane protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd01501
beta-Lactam resistance
vpd01503
Cationic antimicrobial peptide (CAMP) resistance
vpd02020
Two-component system
vpd03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
VAPA_1c38480
09132 Signal transduction
02020 Two-component system
VAPA_1c38480
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
VAPA_1c38480
01503 Cationic antimicrobial peptide (CAMP) resistance
VAPA_1c38480
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c38480
02044 Secretion system [BR:
vpd02044
]
VAPA_1c38480
01504 Antimicrobial resistance genes [BR:
vpd01504
]
VAPA_1c38480
Transporters [BR:
vpd02000
]
Other transporters
Pores ion channels [TC:
1
]
VAPA_1c38480
Secretion system [BR:
vpd02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
VAPA_1c38480
RTX toxin transporter
VAPA_1c38480
Multiple protein transporter
VAPA_1c38480
RaxAB-RaxC type I secretion system protein
VAPA_1c38480
Antimicrobial resistance genes [BR:
vpd01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
VAPA_1c38480
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
VAPA_1c38480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
AGU50930
UniProt:
T1XFN6
LinkDB
All DBs
Position
1:4061115..4062653
Genome browser
AA seq
512 aa
AA seq
DB search
MPFRPRLLPLSAALASLFATLLALPAQGQTLNELYESARGFDATYQGARAQYDASVARAA
QAKAGILPAVGLTAGATRNNLDIDTLTGTGRGTTIPRDFTTQNVGINATQPLYRPANWAT
YEQGKRQAEIAQAVLTIAEQDLIVRVSQAYFDVLASQDSLTLVRAQKVAVAEQLASAKRN
FEVGTSTITDTREAQARYDLVIAQEIAAENDLQVKKVVLDQLVGRPGSVPVPLAQPVVLP
AATPANIEAWVAQAEEAHPAIRQARLGLDVAGLEIRKAEAGHKPTLDANLGYNITRNPDG
SSTSTVGTRINAASVGVVFNLPLFAGFATENRIKETLALEDQSRSVLDGTRRSVAQATRA
AYLGLVSGAGQVKALEAAEASSQSALDANRLGYQVGVRINIDVLNSQSQLFQTKRDLAQA
RYNVLLGNLKLRQANGTLTINDMNAINATLAKNGSTAASPSLGEQPQAAPSVPVTPPRIP
VVPPVPVPPFNPPAPTMPAAPPPPVILNPPAR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcaggcccaggcttttgcctctttccgcagcgctcgcaagtctctttgccacc
ctgctcgcgctgccggcccagggccagacactgaacgaactctacgaatccgcacgcggc
ttcgacgccacctaccagggcgcgcgggcccagtacgacgcgagcgtggcgcgcgccgcc
caggccaaggccggcattcttcccgccgtggggctcacggccggcgccacgcgcaacaac
ctcgacatcgacacgctcactggcaccggccgcggaacgaccatcccgcgcgacttcacc
acgcagaacgtcggcatcaacgccacgcaaccgctctaccggcccgccaactgggccacc
tacgagcagggcaagcgccaggccgagatcgcgcaagcggtgctcaccattgccgagcag
gacctgatcgtgcgcgtgagccaggcctatttcgacgtgctcgccagccaggacagcctg
acgctggtgcgcgcgcagaaggtggcggtggccgaacagctcgcgtcggccaagcgcaac
ttcgaggtcggcacctccaccatcaccgacacgcgcgaagcccaggcccgctacgacctc
gtcattgcacaggagattgccgccgagaacgacctgcaggtgaagaaggtggtgctcgac
cagctggtcggccgtccgggcagcgtgccggtgccgctggcgcagccggtggtgctgccg
gccgccacgccggccaacatcgaggcctgggtggcgcaggccgaggaagcgcacccggcc
atccgccaggcgcggctcgggctcgacgttgccgggctcgaaatccgcaaggccgaagcc
ggccacaagccgacgctcgacgccaacctgggctacaacatcacgcgcaatccggatgga
tccagcaccagcaccgtgggcacgcgcatcaacgctgcgtccgtgggggtggtgttcaac
ctgccgcttttcgcgggctttgccaccgagaaccgcatcaaggaaacgctcgcgctcgag
gaccagtcgcgcagcgtgctcgacggcacccgccgcagcgtggcgcaggccacgcgcgcg
gcctacctcgggctggtgtccggcgcggggcaggtcaaggcgctcgaagcggccgaggca
tcgagccagagcgcgctcgatgccaaccggctcggctaccaggtgggcgtgcgcatcaac
atcgacgtgctcaattcgcagagccagctgttccagaccaagcgcgatctcgcgcaggcg
cgctacaacgtgctgctgggcaacctgaagctgcgccaggccaacggcacgctgaccatc
aacgacatgaacgcgatcaacgcgacgctggcgaagaacggaagcacggcggcttcgcca
tcactcggcgagcagccgcaggccgcgccttcggtgccggtcacgccgcccagaattccc
gtggtgccgccggtgccggtgccgccgttcaatccgccggcaccgacgatgcctgccgca
ccgccgccgccagtcatcctgaatccccccgcacggtaa
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